Aliases for JCADP1 Gene

Aliases for JCADP1 Gene

  • JCAD Pseudogene 1 2 3 5
  • Junctional Cadherin 5 Associated Pseudogene 3
  • JCADP1 5

External Ids for JCADP1 Gene

Summaries for JCADP1 Gene

GeneCards Summary for JCADP1 Gene

JCADP1 (JCAD Pseudogene 1) is a Pseudogene.

Additional gene information for JCADP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for JCADP1 Gene

Genomics for JCADP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for JCADP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039523 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -1.9 -1882 1.8 CTBP1 ZNF217 MBD2 TOE1 ZNF24 GATA3 MYC GATA2 NCOA3 JCADP1 lnc-SH3BGR-1 B3GALT5 LCA5L RPS26P4 SH3BGR
GH21J039525 Enhancer 0.6 Ensembl dbSUPER 600.7 +0.3 318 0.2 ATF4 ZBTB40 GABPB1 JCADP1 lnc-SH3BGR-1 B3GALT5 piR-36588-257 SH3BGR
GH21J039527 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.5 2518 2.6 REST CTBP1 ZNF316 MAFF ESRRA MAFK PKNOX1 ZNF217 MAFG MIER1 B3GALT5 LCA5L SH3BGR JCADP1 lnc-SH3BGR-1 piR-36588-257
GH21J039518 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -6.9 -6862 1 CTCF KDM1A ZNF143 REST RAD21 TRIM22 ZKSCAN1 ZNF444 SMC3 CHD1 LCA5L B3GALT5 JCADP1 lnc-SH3BGR-1 RPS26P4 SH3BGR
GH21J039535 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +11.7 11700 3.5 KDM1A NRF1 ZBTB5 YY1 FOSL1 ETS1 SIN3A MAFK NANOG POLR2A B3GALT5 LCA5L B3GALT5-AS1 SH3BGR piR-36588-257 JCADP1 lnc-SH3BGR-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around JCADP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for JCADP1 Gene

Genomic Locations for JCADP1 Gene
chr21:39,525,583-39,529,855
(GRCh38/hg38)
Size:
4,273 bases
Orientation:
Plus strand
chr21:40,897,510-40,901,782
(GRCh37/hg19)
Size:
4,273 bases
Orientation:
Plus strand

Genomic View for JCADP1 Gene

Genes around JCADP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JCADP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JCADP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JCADP1 Gene

Proteins for JCADP1 Gene

Post-translational modifications for JCADP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JCADP1 Gene

Domains & Families for JCADP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for JCADP1 Gene

Function for JCADP1 Gene

Phenotypes From GWAS Catalog for JCADP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JCADP1 Gene

Localization for JCADP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for JCADP1 Gene

Pathways & Interactions for JCADP1 Gene

PathCards logo

SuperPathways for JCADP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for JCADP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for JCADP1 Gene

Drugs & Compounds for JCADP1 Gene

No Compound Related Data Available

Transcripts for JCADP1 Gene

mRNA/cDNA for JCADP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for JCADP1 Gene

No ASD Table

Relevant External Links for JCADP1 Gene

GeneLoc Exon Structure for
JCADP1

Expression for JCADP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JCADP1 Gene

Orthologs for JCADP1 Gene

Evolution for JCADP1 Gene

ENSEMBL:
Gene Tree for JCADP1 (if available)
TreeFam:
Gene Tree for JCADP1 (if available)

No data available for Orthologs for JCADP1 Gene

Paralogs for JCADP1 Gene

No data available for Paralogs for JCADP1 Gene

Variants for JCADP1 Gene

Additional Variant Information for JCADP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JCADP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for JCADP1 Gene

Disorders for JCADP1 Gene

No disorders were found for JCADP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for JCADP1 Gene

Publications for JCADP1 Gene

No publications were found for JCADP1 Gene.

No data available for Mastermind for JCADP1 Gene

Products for JCADP1 Gene

Sources for JCADP1 Gene