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Aliases for JARID2-AS1 Gene

Subcategory (RNA class) for JARID2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JARID2-AS1 Gene

  • JARID2 Antisense RNA 1 2 3 5
  • JARID2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JARID2-AS1 Gene

Summaries for JARID2-AS1 Gene

GeneCards Summary for JARID2-AS1 Gene

JARID2-AS1 (JARID2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for JARID2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JARID2-AS1 Gene

Genomics for JARID2-AS1 Gene

GeneHancer (GH) Regulatory Elements for JARID2-AS1 Gene

Promoters and enhancers for JARID2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I014731 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11 +514.8 514813 4.6 PKNOX1 CLOCK SMAD1 ARNT NEUROD1 IRF4 ZNF766 CBX5 E2F8 FOS JARID2 JARID2-AS1 RNU6-793P LOC101928354 GC06M014748 ENSG00000234261
GH06I014726 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +519.5 519502 4.4 HDGF PKNOX1 SMAD1 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 FOS JARID2 JARID2-AS1 RNU6-793P LOC101928354 GC06M014748 ENSG00000234261
GH06I015295 Enhancer 1.4 Ensembl ENCODE dbSUPER 12 -50.2 -50189 6 HDGF PKNOX1 SMAD1 ARNT YBX1 FEZF1 ZNF2 IRF4 ZNF766 CBX5 RNU6-645P JARID2 JARID2-AS1 LOC100131159 GC06P015314 PIR40137
GH06I015279 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.9 -32.0 -32026 3.1 ELF3 HDGF PKNOX1 FOXA2 ZSCAN4 MZF1 FEZF1 RAD21 RARA YY1 JARID2 JARID2-AS1 RNU6-645P RNU6-522P ENSG00000271888 DTNBP1 PIR40137 GC06P015314
GH06I015443 Promoter/Enhancer 1.4 EPDnew ENCODE dbSUPER 11.9 -195.3 -195337 1.2 RFX1 CEBPB ZEB2 DPF2 OSR2 FOSL1 JUND ZNF366 ZNF629 SCRT2 JARID2 RNU6-522P JARID2-AS1 RNU6-645P ENSG00000277411 GC06M015325
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for JARID2-AS1 Gene

Genomic Locations for JARID2-AS1 Gene
chr6:15,247,815-15,248,696
(GRCh38/hg38)
Size:
882 bases
Orientation:
Minus strand
chr6:15,248,046-15,248,887
(GRCh37/hg19)

Genomic View for JARID2-AS1 Gene

Genes around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JARID2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JARID2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JARID2-AS1 Gene

Proteins for JARID2-AS1 Gene

Post-translational modifications for JARID2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JARID2-AS1 Gene

Domains & Families for JARID2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JARID2-AS1 Gene

Function for JARID2-AS1 Gene

Phenotypes From GWAS Catalog for JARID2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JARID2-AS1 Gene

Localization for JARID2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for JARID2-AS1 Gene

Pathways & Interactions for JARID2-AS1 Gene

SuperPathways for JARID2-AS1 Gene

No Data Available

Interacting Proteins for JARID2-AS1 Gene

Gene Ontology (GO) - Biological Process for JARID2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JARID2-AS1 Gene

Drugs & Compounds for JARID2-AS1 Gene

No Compound Related Data Available

Transcripts for JARID2-AS1 Gene

mRNA/cDNA for JARID2-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JARID2-AS1 Gene

JARID2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for JARID2-AS1 Gene

No ASD Table

Relevant External Links for JARID2-AS1 Gene

GeneLoc Exon Structure for
JARID2-AS1
ECgene alternative splicing isoforms for
JARID2-AS1

Expression for JARID2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for JARID2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for JARID2-AS1 Gene

This gene is overexpressed in Testis (x36.5).

SOURCE GeneReport for Unigene cluster for JARID2-AS1 Gene:

Hs.664092
genes like me logo Genes that share expression patterns with JARID2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JARID2-AS1 Gene

Orthologs for JARID2-AS1 Gene

Evolution for JARID2-AS1 Gene

ENSEMBL:
Gene Tree for JARID2-AS1 (if available)
TreeFam:
Gene Tree for JARID2-AS1 (if available)

No data available for Orthologs for JARID2-AS1 Gene

Paralogs for JARID2-AS1 Gene

No data available for Paralogs for JARID2-AS1 Gene

Variants for JARID2-AS1 Gene

Sequence variations from dbSNP and Humsavar for JARID2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1001000928 -- 15,247,700(-) A/C downstream_transcript_variant
rs1001033348 -- 15,247,378(-) A/G downstream_transcript_variant
rs1001589689 -- 15,250,565(-) A/G upstream_transcript_variant
rs1002544596 -- 15,247,922(-) A/G non_coding_transcript_variant
rs1003989919 -- 15,249,274(-) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for JARID2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv27933 CNV loss 19812545
nsv1144133 CNV deletion 24896259
nsv830594 CNV loss 17160897
nsv950773 CNV deletion 24416366

Additional Variant Information for JARID2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JARID2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JARID2-AS1 Gene

Disorders for JARID2-AS1 Gene

Additional Disease Information for JARID2-AS1

No disorders were found for JARID2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JARID2-AS1 Gene

Publications for JARID2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for JARID2-AS1 Gene

Sources for JARID2-AS1 Gene

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