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Aliases for ITPR1-AS1 Gene

Subcategory (RNA class) for ITPR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITPR1-AS1 Gene

  • ITPR1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for ITPR1-AS1 Gene

Summaries for ITPR1-AS1 Gene

GeneCards Summary for ITPR1-AS1 Gene

ITPR1-AS1 (ITPR1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ITPR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITPR1-AS1 Gene

Genomics for ITPR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ITPR1-AS1 Gene

Promoters and enhancers for ITPR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I004491 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.0 -998 5 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 MEF2D ZNF610 ITPR1 ITPR1-AS1 SUMF1 SETMAR EDEM1 LOC105376933
GH03I004532 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.4 -40.6 -40613 2.5 HDGF PKNOX1 SMAD1 FOXA2 ARNT FEZF1 ZNF766 E2F8 REST ZNF592 ITPR1 ITPR1-AS1 LOC105376933
GH03I004531 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.4 -38.5 -38544 0.9 HDGF HNRNPUL1 PKNOX1 ATF1 ARNT ZFP64 TCF12 GATA2 E2F8 ZNF416 ITPR1 ITPR1-AS1 LOC105376933
GH03I004580 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 -89.7 -89719 5 PKNOX1 FEZF1 RAD21 ZNF143 IKZF2 EGR2 ZNF362 PHF21A ZNF398 REST LOC105376933 ITPR1 ITPR1-AS1
GH03I004570 Enhancer 1 ENCODE dbSUPER 12.9 -78.1 -78096 1.1 PKNOX1 ZNF48 RAD21 RARA ARID2 THAP11 MIXL1 MXD4 REST NFIC ITPR1 ITPR1-AS1 LOC105376933
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ITPR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ITPR1-AS1 Gene

Genomic Locations for ITPR1-AS1 Gene
chr3:4,490,317-4,493,163
(GRCh38/hg38)
Size:
2,847 bases
Orientation:
Minus strand
chr3:4,532,575-4,534,847
(GRCh37/hg19)

Genomic View for ITPR1-AS1 Gene

Genes around ITPR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITPR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPR1-AS1 Gene

Proteins for ITPR1-AS1 Gene

Post-translational modifications for ITPR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPR1-AS1 Gene

Domains & Families for ITPR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITPR1-AS1 Gene

Function for ITPR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPR1-AS1 Gene

Localization for ITPR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITPR1-AS1 Gene

Pathways & Interactions for ITPR1-AS1 Gene

SuperPathways for ITPR1-AS1 Gene

No Data Available

Interacting Proteins for ITPR1-AS1 Gene

Gene Ontology (GO) - Biological Process for ITPR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITPR1-AS1 Gene

Drugs & Compounds for ITPR1-AS1 Gene

No Compound Related Data Available

Transcripts for ITPR1-AS1 Gene

mRNA/cDNA for ITPR1-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITPR1-AS1 Gene

ITPR1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ITPR1-AS1 Gene

No ASD Table

Relevant External Links for ITPR1-AS1 Gene

GeneLoc Exon Structure for
ITPR1-AS1
ECgene alternative splicing isoforms for
ITPR1-AS1

Expression for ITPR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITPR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ITPR1-AS1 Gene:

Hs.190365
genes like me logo Genes that share expression patterns with ITPR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITPR1-AS1 Gene

Orthologs for ITPR1-AS1 Gene

Evolution for ITPR1-AS1 Gene

ENSEMBL:
Gene Tree for ITPR1-AS1 (if available)
TreeFam:
Gene Tree for ITPR1-AS1 (if available)

No data available for Orthologs for ITPR1-AS1 Gene

Paralogs for ITPR1-AS1 Gene

No data available for Paralogs for ITPR1-AS1 Gene

Variants for ITPR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ITPR1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1051405416 uncertain-significance, Spinocerebellar Ataxia, Dominant 4,493,555(-) C/A upstream_transcript_variant
rs13319720 likely-benign, Spinocerebellar Ataxia, Dominant 4,494,442(-) A/G upstream_transcript_variant
rs577585180 likely-benign, Spinocerebellar Ataxia, Dominant 4,493,454(-) G/A upstream_transcript_variant
rs750565307 uncertain-significance, Spinocerebellar Ataxia, Dominant 4,493,595(-) C/T upstream_transcript_variant
rs886058522 uncertain-significance, Spinocerebellar Ataxia, Dominant 4,493,356(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ITPR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422450 CNV deletion 17116639

Additional Variant Information for ITPR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITPR1-AS1 Gene

Disorders for ITPR1-AS1 Gene

Additional Disease Information for ITPR1-AS1

No disorders were found for ITPR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPR1-AS1 Gene

Publications for ITPR1-AS1 Gene

No publications were found for ITPR1-AS1 Gene.

Products for ITPR1-AS1 Gene

Sources for ITPR1-AS1 Gene

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