Aliases for ITPKB-IT1 Gene

Data sources for ITPKB-IT1 Gene:

RNA type for ITPKB-IT1 Gene

lncRNA

Aliases for ITPKB-IT1 Gene

External Ids for ITPKB-IT1 Gene

Previous GeneCards Identifiers for ITPKB-IT1 Gene

  • GC01M226863

Summaries for ITPKB-IT1 Gene

GeneCards Summary for ITPKB-IT1 Gene

ITPKB-IT1 (ITPKB Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ITPKB-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ITPKB-IT1 Gene

Genomics for ITPKB-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ITPKB-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J226671 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.0 -2994 12.7 BCLAF1 MYC JUND ATF2 POLR2A ZIC2 CTCF BHLHE40 FEZF1 ZNF341 ITPKB STUM ITPKB-IT1 HSALNG0011102 LOC105373117 ITPKB-AS1
GH01J226651 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.2 15184 16.3 BCLAF1 SP1 ZNF600 JUND ZNF10 ZSCAN16 POLR2A NFIC ZIC2 YY1 HSALNG0011100 ZNF678 ITPKB ACBD3 CDC42BPA STUM PSEN2 lnc-PARP1-5 ITPKB-AS1 ITPKB-IT1
GH01J226686 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.9 -14920 8 ZIC2 CTCF SIN3A ZNF513 EBF1 JUND PRDM4 GATA2 IKZF1 ZSCAN4 ITPKB ITPKB-AS1 STUM LOC105373117 ITPKB-IT1
GH01J226672 Enhancer 0.7 ENCODE dbSUPER 0.7 +3.6 3553 0.2 TCF7L2 FOXA1 ATF4 OSR2 RFX1 SCRT2 ZBTB44 HSALNG0011102 ITPKB-IT1 ITPKB-AS1 ITPKB STUM
GH01J226695 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -22.4 -22443 3.7 NR2C1 ZNF217 CTBP1 EBF1 MAX JUND BHLHE40 RFX5 SMARCE1 PKNOX1 LOC105373117 ITPKB H3-3A PSEN2 ITPKB-IT1 ITPKB-AS1 STUM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITPKB-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ITPKB-IT1 Gene

Latest Assembly
chr1:226,656,079-226,675,068
(GRCh38/hg38)
Size:
18,990 bases
Orientation:
Minus strand

Previous Assembly
chr1:226,843,781-226,862,769
(GRCh37/hg19 by Entrez Gene)
Size:
18,989 bases
Orientation:
Minus strand

chr1:226,844,341-226,862,768
(GRCh37/hg19 by Ensembl)
Size:
18,428 bases
Orientation:
Minus strand

Genomic View for ITPKB-IT1 Gene

Genes around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track
ITPKB-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ITPKB-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPKB-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPKB-IT1 Gene

Proteins for ITPKB-IT1 Gene

Post-translational modifications for ITPKB-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPKB-IT1 Gene

Domains & Families for ITPKB-IT1 Gene

Gene Families for ITPKB-IT1 Gene

genes like me logo Genes that share domains with ITPKB-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ITPKB-IT1 Gene

Function for ITPKB-IT1 Gene

Phenotypes From GWAS Catalog for ITPKB-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPKB-IT1 Gene

Localization for ITPKB-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITPKB-IT1 Gene

Pathways & Interactions for ITPKB-IT1 Gene

PathCards logo

SuperPathways for ITPKB-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ITPKB-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ITPKB-IT1 Gene

Drugs & Compounds for ITPKB-IT1 Gene

No Compound Related Data Available

Transcripts for ITPKB-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ITPKB-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075BD1A_9606 lncRNA 1347 4

RefSeq: NR_103784,

LncBook: HSALNT0023121,

LNCipedia: ITPKB-IT1:1,

NONCODE: NONHSAT009899.2,

URS000017A8A2_9606 lncRNA 721 4

Ensembl: ENST00000443422 (view in UCSC) ,

LncBook: HSALNT0023122,

LNCipedia: ITPKB-IT1:3,

NONCODE: NONHSAT009900.2,

URS000047125C_9606 lncRNA 746 3

Ensembl: ENST00000412918 (view in UCSC) ,

LncBook: HSALNT0023124,

LNCipedia: ITPKB-IT1:2,

URS00009BC7E5_9606 lncRNA 870 2

LncBook: HSALNT0023123,

NONCODE: NONHSAT153051.1,

URS0001BF386A_9606 lncRNA 1347 1

LncBook: HSALNT0023121,

ITPKB-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ITPKB-IT1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ITPKB-IT1 Gene

No ASD Table

Relevant External Links for ITPKB-IT1 Gene

GeneLoc Exon Structure for
ITPKB-IT1

Expression for ITPKB-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITPKB-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ITPKB-IT1 Gene

This gene is overexpressed in Whole Blood (x28.6) and Spleen (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ITPKB-IT1

SOURCE GeneReport for Unigene cluster for ITPKB-IT1 Gene:

Hs.664293
genes like me logo Genes that share expression patterns with ITPKB-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITPKB-IT1 Gene

Orthologs for ITPKB-IT1 Gene

Evolution for ITPKB-IT1 Gene

ENSEMBL:
Gene Tree for ITPKB-IT1 (if available)
TreeFam:
Gene Tree for ITPKB-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for ITPKB-IT1

No data available for Orthologs for ITPKB-IT1 Gene

Paralogs for ITPKB-IT1 Gene

No data available for Paralogs for ITPKB-IT1 Gene

Variants for ITPKB-IT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ITPKB-IT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ITPKB-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv522446 CNV loss 19592680

Additional Variant Information for ITPKB-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPKB-IT1
Leiden Open Variation Database (LOVD)
ITPKB-IT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ITPKB-IT1 Gene

Disorders for ITPKB-IT1 Gene

Additional Disease Information for ITPKB-IT1

No disorders were found for ITPKB-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPKB-IT1 Gene

Publications for ITPKB-IT1 Gene

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3

No data available for Mastermind for ITPKB-IT1 Gene

Products for ITPKB-IT1 Gene

Sources for ITPKB-IT1 Gene