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Aliases for ITPKB-IT1 Gene

Subcategory (RNA class) for ITPKB-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITPKB-IT1 Gene

  • ITPKB Intronic Transcript 1 2 3 5
  • ITPKB Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ITPKB-IT1 Gene

Previous GeneCards Identifiers for ITPKB-IT1 Gene

  • GC01M226863

Summaries for ITPKB-IT1 Gene

GeneCards Summary for ITPKB-IT1 Gene

ITPKB-IT1 (ITPKB Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ITPKB-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITPKB-IT1 Gene

Genomics for ITPKB-IT1 Gene

GeneHancer (GH) Regulatory Elements for ITPKB-IT1 Gene

Promoters and enhancers for ITPKB-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I226671 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.0 -2994 12.7 HDGF PKNOX1 ATF1 SIN3A FEZF1 ZNF2 ZNF121 ATF7 RUNX3 KLF13 ITPKB STUM ITPKB-IT1 ITPKB-AS1 LOC105373117
GH01I226651 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.1 15112 16.5 HDGF PKNOX1 SMAD1 SIN3A FEZF1 YBX1 IRF4 ETS1 GLIS2 ZNF143 ZNF678 ITPKB ACBD3 CDC42BPA STUM PSEN2 ITPKB-AS1 ITPKB-IT1 GC01P226605
GH01I226672 Enhancer 0.7 ENCODE dbSUPER 0.8 +3.6 3553 0.2 OSR2 ATF4 GATA3 RFX1 SCRT2 FOXA1 TCF7L2 ITPKB-AS1 ITPKB-IT1 ITPKB
GH01I226686 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.9 -14920 8 CTCF JUN ZSCAN4 SIN3A EBF1 ZIC2 NR2F2 JUND POLR2A IKZF1 ITPKB ITPKB-AS1 STUM LOC105373117 ITPKB-IT1
GH01I226695 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.4 -22443 3.7 PKNOX1 ESRRA SMAD1 ZNF449 ZMYM3 EBF1 CTBP1 GATA3 ZNF366 SCRT2 ITPKB H3F3A PSEN2 LOC105373117 ITPKB-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ITPKB-IT1 Gene

Genomic Locations for ITPKB-IT1 Gene
chr1:226,656,080-226,675,068
(GRCh38/hg38)
Size:
18,989 bases
Orientation:
Minus strand
chr1:226,844,341-226,862,769
(GRCh37/hg19)

Genomic View for ITPKB-IT1 Gene

Genes around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITPKB-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPKB-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPKB-IT1 Gene

Proteins for ITPKB-IT1 Gene

Post-translational modifications for ITPKB-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPKB-IT1 Gene

Domains & Families for ITPKB-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITPKB-IT1 Gene

Function for ITPKB-IT1 Gene

Phenotypes From GWAS Catalog for ITPKB-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPKB-IT1 Gene

Localization for ITPKB-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITPKB-IT1 Gene

Pathways & Interactions for ITPKB-IT1 Gene

SuperPathways for ITPKB-IT1 Gene

No Data Available

Interacting Proteins for ITPKB-IT1 Gene

Gene Ontology (GO) - Biological Process for ITPKB-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITPKB-IT1 Gene

Drugs & Compounds for ITPKB-IT1 Gene

No Compound Related Data Available

Transcripts for ITPKB-IT1 Gene

mRNA/cDNA for ITPKB-IT1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITPKB-IT1 Gene

ITPKB intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITPKB-IT1 Gene

No ASD Table

Relevant External Links for ITPKB-IT1 Gene

GeneLoc Exon Structure for
ITPKB-IT1
ECgene alternative splicing isoforms for
ITPKB-IT1

Expression for ITPKB-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITPKB-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ITPKB-IT1 Gene

This gene is overexpressed in Whole Blood (x28.6) and Spleen (x4.4).

SOURCE GeneReport for Unigene cluster for ITPKB-IT1 Gene:

Hs.664293
genes like me logo Genes that share expression patterns with ITPKB-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITPKB-IT1 Gene

Orthologs for ITPKB-IT1 Gene

Evolution for ITPKB-IT1 Gene

ENSEMBL:
Gene Tree for ITPKB-IT1 (if available)
TreeFam:
Gene Tree for ITPKB-IT1 (if available)

No data available for Orthologs for ITPKB-IT1 Gene

Paralogs for ITPKB-IT1 Gene

No data available for Paralogs for ITPKB-IT1 Gene

Variants for ITPKB-IT1 Gene

Sequence variations from dbSNP and Humsavar for ITPKB-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000066237 -- 226,668,116(-) T/C intron_variant
rs1000143885 -- 226,669,578(-) A/G intron_variant
rs1000169594 -- 226,661,470(-) G/A intron_variant
rs1000347318 -- 226,674,242(-) C/T intron_variant
rs1000399651 -- 226,674,044(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ITPKB-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv522446 CNV loss 19592680

Additional Variant Information for ITPKB-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPKB-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITPKB-IT1 Gene

Disorders for ITPKB-IT1 Gene

Additional Disease Information for ITPKB-IT1

No disorders were found for ITPKB-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPKB-IT1 Gene

Publications for ITPKB-IT1 Gene

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3 58

Products for ITPKB-IT1 Gene

Sources for ITPKB-IT1 Gene

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