Aliases for ITPKB-AS1 Gene

Data sources for ITPKB-AS1 Gene:

RNA type for ITPKB-AS1 Gene

lncRNA

Aliases for ITPKB-AS1 Gene

External Ids for ITPKB-AS1 Gene

Previous GeneCards Identifiers for ITPKB-AS1 Gene

  • GC00U933698
  • GC01P226857
  • GC01P226668

Summaries for ITPKB-AS1 Gene

GeneCards Summary for ITPKB-AS1 Gene

ITPKB-AS1 (ITPKB Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ITPKB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ITPKB-AS1 Gene

Genomics for ITPKB-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ITPKB-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J226708 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +58.0 58023 6.6 BCLAF1 ZNF600 JUND ZNF580 POLR2A CEBPA ZSCAN16 NFIC YY1 REST ACBD3 ZNF678 ITPKB ACBD3-AS1 ITPKB-AS1 CDC42BPA H3-3A-DT LOC105373117 lnc-CDC42BPA-5 STUM
GH01J226686 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +36.4 36399 8 ZIC2 CTCF SIN3A ZNF513 EBF1 JUND PRDM4 GATA2 IKZF1 ZSCAN4 ITPKB ITPKB-AS1 STUM LOC105373117 ITPKB-IT1
GH01J226748 Enhancer 0.8 Ensembl dbSUPER 10.6 +94.9 94912 0.6 ZNF580 ZEB1 ZNF433 ZFP37 ZNF547 ZNF664 ZNF518A ZBTB21 ZNF140 ZNF202 ACBD3 ACBD3-AS1 ZNF678 JMJD4 ITPKB-AS1 H3-3A PSEN2 HSALNG0011105 ITPKB RF00994-096
GH01J226753 Enhancer 0.8 Ensembl 10.5 +101.0 101012 3.2 IKZF1 NBN TAL1 HLTF ZBTB48 EHMT2 HDAC2 FOXK2 ZNF547 TCF12 JMJD4 ITPKB-AS1 PSEN2 RF00994-096 HSALNG0011105 ITPKB ENSG00000288674
GH01J226787 Enhancer 0.8 Ensembl dbSUPER 10.1 +133.3 133312 0.2 BCL11A EBF1 BATF ZNF24 IKZF1 HDGF ATF2 JUNB ZBED1 PKNOX1 ITPKB ITPKB-AS1 COQ8A RF00017-440 RPS27P5 PSEN2 ENSG00000288674
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITPKB-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ITPKB-AS1 Gene

Latest Assembly
chr1:226,653,589-226,701,396
(GRCh38/hg38)
Size:
47,808 bases
Orientation:
Plus strand

Previous Assembly
chr1:226,856,598-226,864,046
(GRCh37/hg19 by Ensembl)
Size:
7,449 bases
Orientation:
Plus strand

Genomic View for ITPKB-AS1 Gene

Genes around ITPKB-AS1 on UCSC Golden Path with GeneCards custom track
ITPKB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ITPKB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPKB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITPKB-AS1 Gene

Proteins for ITPKB-AS1 Gene

Post-translational modifications for ITPKB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPKB-AS1 Gene

Domains & Families for ITPKB-AS1 Gene

Gene Families for ITPKB-AS1 Gene

genes like me logo Genes that share domains with ITPKB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ITPKB-AS1 Gene

Function for ITPKB-AS1 Gene

Phenotypes From GWAS Catalog for ITPKB-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPKB-AS1 Gene

Localization for ITPKB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITPKB-AS1 Gene

Pathways & Interactions for ITPKB-AS1 Gene

PathCards logo

SuperPathways for ITPKB-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ITPKB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ITPKB-AS1 Gene

Drugs & Compounds for ITPKB-AS1 Gene

No Compound Related Data Available

Transcripts for ITPKB-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ITPKB-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002FF0BC_9606 lncRNA 538 4

Ensembl: ENST00000453525 (view in UCSC) ,

LncBook: HSALNT0023129,

LNCipedia: ITPKB-AS1:1,

NONCODE: NONHSAT009901.2,

URS0000D5C552_9606 lncRNA 40234 1

LNCipedia: ITPKB-AS1:3,

URS0000D5A3F3_9606 lncRNA 36843 1

LNCipedia: ITPKB-AS1:2,

ITPKB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ITPKB-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ITPKB-AS1 Gene

No ASD Table

Relevant External Links for ITPKB-AS1 Gene

GeneLoc Exon Structure for
ITPKB-AS1

Expression for ITPKB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITPKB-AS1 Gene

genes like me logo Genes that share expression patterns with ITPKB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITPKB-AS1 Gene

Orthologs for ITPKB-AS1 Gene

Evolution for ITPKB-AS1 Gene

ENSEMBL:
Gene Tree for ITPKB-AS1 (if available)
TreeFam:
Gene Tree for ITPKB-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for ITPKB-AS1

No data available for Orthologs for ITPKB-AS1 Gene

Paralogs for ITPKB-AS1 Gene

No data available for Paralogs for ITPKB-AS1 Gene

Variants for ITPKB-AS1 Gene

Additional Variant Information for ITPKB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPKB-AS1
Leiden Open Variation Database (LOVD)
ITPKB-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITPKB-AS1 Gene

Disorders for ITPKB-AS1 Gene

No disorders were found for ITPKB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITPKB-AS1 Gene

Publications for ITPKB-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for ITPKB-AS1 Gene

Products for ITPKB-AS1 Gene

Sources for ITPKB-AS1 Gene