Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ITGB5-AS1 Gene

Subcategory (RNA class) for ITGB5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITGB5-AS1 Gene

  • ITGB5 Antisense RNA 1 2 3 5
  • ITGB5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ITGB5-AS1 Gene

Previous GeneCards Identifiers for ITGB5-AS1 Gene

  • GC00U933617
  • GC03P124501

Summaries for ITGB5-AS1 Gene

GeneCards Summary for ITGB5-AS1 Gene

ITGB5-AS1 (ITGB5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ITGB5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGB5-AS1 Gene

Genomics for ITGB5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ITGB5-AS1 Gene

Promoters and enhancers for ITGB5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I124779 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 0.0 -13 3 BCOR RXRA HLF CEBPB ZMYM3 EBF1 ELF1 THRB RAD21 NFIL3 ITGB5-AS1 ITGB5 UMPS GC03M124772 GC03M124774
GH03I124882 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +105.0 104997 8 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GLIS2 SP3 ITGB5 ITGB5-AS1 MUC13 GC03M124774 GC03P124890
GH03I124831 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +54.7 54703 9.5 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 IRF4 YY1 ITGB5 ITGB5-AS1 UMPS KALRN ENO1P3 ENSG00000280042 GC03M124774
GH03I124925 Promoter/Enhancer 1.5 EPDnew ENCODE dbSUPER 10.5 +149.3 149318 10.4 HDGF SOX13 CTCF PKNOX1 BMI1 BATF IRF4 RAD21 CTBP1 ZNF143 MUC13 ITGB5 ITGB5-AS1 RNU6-232P UMPS
GH03I124875 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.8 +97.0 96971 5.3 HDGF PKNOX1 FOXA2 ARID4B SIN3A YY1 FOS REST SMARCB1 ZNF592 ITGB5 ITGB5-AS1 MUC13 GC03M124774 ENO1P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ITGB5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ITGB5-AS1 Gene

Genomic Locations for ITGB5-AS1 Gene
chr3:124,781,155-124,787,757
(GRCh38/hg38)
Size:
6,603 bases
Orientation:
Plus strand
chr3:124,500,002-124,506,604
(GRCh37/hg19)

Genomic View for ITGB5-AS1 Gene

Genes around ITGB5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGB5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGB5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITGB5-AS1 Gene

Proteins for ITGB5-AS1 Gene

Post-translational modifications for ITGB5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITGB5-AS1 Gene

Domains & Families for ITGB5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITGB5-AS1 Gene

Function for ITGB5-AS1 Gene

Phenotypes From GWAS Catalog for ITGB5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITGB5-AS1 Gene

Localization for ITGB5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITGB5-AS1 Gene

Pathways & Interactions for ITGB5-AS1 Gene

SuperPathways for ITGB5-AS1 Gene

No Data Available

Interacting Proteins for ITGB5-AS1 Gene

Gene Ontology (GO) - Biological Process for ITGB5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITGB5-AS1 Gene

Drugs & Compounds for ITGB5-AS1 Gene

No Compound Related Data Available

Transcripts for ITGB5-AS1 Gene

mRNA/cDNA for ITGB5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITGB5-AS1 Gene

No ASD Table

Relevant External Links for ITGB5-AS1 Gene

GeneLoc Exon Structure for
ITGB5-AS1
ECgene alternative splicing isoforms for
ITGB5-AS1

Expression for ITGB5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITGB5-AS1 Gene

genes like me logo Genes that share expression patterns with ITGB5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITGB5-AS1 Gene

Orthologs for ITGB5-AS1 Gene

Evolution for ITGB5-AS1 Gene

ENSEMBL:
Gene Tree for ITGB5-AS1 (if available)
TreeFam:
Gene Tree for ITGB5-AS1 (if available)

No data available for Orthologs for ITGB5-AS1 Gene

Paralogs for ITGB5-AS1 Gene

No data available for Paralogs for ITGB5-AS1 Gene

Variants for ITGB5-AS1 Gene

Additional Variant Information for ITGB5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGB5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITGB5-AS1 Gene

Disorders for ITGB5-AS1 Gene

No disorders were found for ITGB5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITGB5-AS1 Gene

Publications for ITGB5-AS1 Gene

No publications were found for ITGB5-AS1 Gene.

Products for ITGB5-AS1 Gene

Sources for ITGB5-AS1 Gene

Content
Loading form....