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ITGAM Gene(Protein Coding)

Integrin Subunit Alpha M

GCID:
GC16P031272
GIFtS:
53
Genes Participants
UDN Logo

Aliases for ITGAM Gene

Aliases for ITGAM Gene

  • Integrin Subunit Alpha M 2 3 5
  • Integrin, Alpha M (Complement Component 3 Receptor 3 Subunit) 2 3
  • Cell Surface Glycoprotein MAC-1 Subunit Alpha 3 4
  • Complement Component 3 Receptor 3 Subunit 2 3
  • CD11 Antigen-Like Family Member B 3 4
  • Leukocyte Adhesion Receptor MO1 3 4
  • CR-3 Alpha Chain 3 4
  • CD11B 3 4
  • CR3A 3 4
  • Integrin, Alpha M (Complement Component Receptor 3, Alpha; Also Known As CD11b (P170), Macrophage Antigen Alpha Polypeptide) 2
  • Neutrophil Adherence Receptor Alpha-M Subunit 3
  • Macrophage Antigen Alpha Polypeptide 3
  • Neutrophil Adherence Receptor 4
  • Antigen CD11b (P170) 3
  • Integrin Alpha-M 3
  • CD11b Antigen 4
  • MAC-1 3
  • MAC1A 3
  • SLEB6 3
  • MO1A 3

External Ids for ITGAM Gene

Previous HGNC Symbols for ITGAM Gene

  • CR3A
  • CD11B

Previous GeneCards Identifiers for ITGAM Gene

  • GC16P030449
  • GC16P031767
  • GC16P031268
  • GC16P031307
  • GC16P031168
  • GC16P031271
  • GC16P028833

Summaries for ITGAM Gene

Entrez Gene Summary for ITGAM Gene

  • This gene encodes the integrin alpha M chain. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain. This I-domain containing alpha integrin combines with the beta 2 chain (ITGB2) to form a leukocyte-specific integrin referred to as macrophage receptor 1 ('Mac-1'), or inactivated-C3b (iC3b) receptor 3 ('CR3'). The alpha M beta 2 integrin is important in the adherence of neutrophils and monocytes to stimulated endothelium, and also in the phagocytosis of complement coated particles. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]

GeneCards Summary for ITGAM Gene

ITGAM (Integrin Subunit Alpha M) is a Protein Coding gene. Diseases associated with ITGAM include Systemic Lupus Erythematosus 6 and Granulocytopenia. Among its related pathways are ERK Signaling and Focal Adhesion. Gene Ontology (GO) annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is ITGAX.

UniProtKB/Swiss-Prot for ITGAM Gene

  • Integrin ITGAM/ITGB2 is implicated in various adhesive interactions of monocytes, macrophages and granulocytes as well as in mediating the uptake of complement-coated particles. It is identical with CR-3, the receptor for the iC3b fragment of the third complement component. It probably recognizes the R-G-D peptide in C3b. Integrin ITGAM/ITGB2 is also a receptor for fibrinogen, factor X and ICAM1. It recognizes P1 and P2 peptides of fibrinogen gamma chain. Regulates neutrophil migration (PubMed:28807980). In association with beta subunit ITGB2/CD18, required for CD177-PRTN3-mediated activation of TNF primed neutrophils (PubMed:21193407). May regulate phagocytosis-induced apoptosis in extravasated neutrophils (By similarity). May play a role in mast cell development (By similarity).

Gene Wiki entry for ITGAM Gene

Additional gene information for ITGAM Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGAM Gene

Genomics for ITGAM Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ITGAM Gene

Promoters and enhancers for ITGAM Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J031259 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 650.7 +0.3 311 1.5 EBF1 ELF1 ZFHX2 IKZF1 ETV6 PRDM10 IKZF2 RUNX3 EGR2 SPI1 ITGAM PYDC1 PYCARD PRSS36 PRSS8 ITGAX
GH16J031125 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.5 -128.8 -128829 10.7 HDGF CLOCK ARNT NEUROD1 SIN3A ZNF766 ZNF207 ZNF548 MCM3 SP3 ENSG00000261385 PRSS8 SRCAP SETD1A ENSG00000260267 SMG1P5 ZNF764 ENSG00000260304 KAT8 BCL7C
GH16J031116 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.3 -141.6 -141555 3.9 HDGF PKNOX1 SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 KAT8 ENSG00000262766 VKORC1 SRCAP SETD1A NPIPB13 ENSG00000260267 SMG1P5 STX4 YBX3P1
GH16J031351 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.5 +94.8 94841 7.2 HDGF PKNOX1 ATF1 IRF4 ZFP91 FOS ATF7 RUNX3 SP3 JUNB ITGAX STX4 PYDC1 KAT8 ITGAM ZNF646 ARMC5 ZNF764 HSD3B7 LOC647086
GH16J031252 Enhancer 1.5 FANTOM5 Ensembl ENCODE 7.7 -6.1 -6069 1.8 PKNOX1 ATF1 ARNT TCF12 ZNF766 E2F8 FOS ATF7 NCOA1 ZNF592 PYDC1 PYCARD TRIM72 PRSS36 ITGAM ITGAX ZNF646 ZNF668 STX4 KAT8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITGAM on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ITGAM gene promoter:
  • AP-1
  • Sp1
  • C/EBPbeta
  • c-Jun
  • ATF-2
  • Lmo2
  • Pax-4a

Genomic Locations for ITGAM Gene

Genomic Locations for ITGAM Gene
chr16:31,259,967-31,332,892
(GRCh38/hg38)
Size:
72,926 bases
Orientation:
Plus strand
chr16:31,271,288-31,344,213
(GRCh37/hg19)
Size:
72,926 bases
Orientation:
Plus strand

Genomic View for ITGAM Gene

Genes around ITGAM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGAM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGAM Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ITGAM Gene

Proteins for ITGAM Gene

Products:

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  3. Assay

  • Protein details for ITGAM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11215-ITAM_HUMAN
    Recommended name:
    Integrin alpha-M
    Protein Accession:
    P11215
    Secondary Accessions:
    • Q4VAK0
    • Q4VAK1
    • Q4VAK2

    Protein attributes for ITGAM Gene

    Size:
    1152 amino acids
    Molecular mass:
    127179 Da
    Quaternary structure:
    • Heterodimer of an alpha and a beta subunit. ITGAM associates with ITGB2. Found in a complex with CD177 and ITGB2/CD18 (PubMed:21193407). Interacts with JAM3 (PubMed:15194813, PubMed:12208882). Interacts with THBD (PubMed:27055590).

    Three dimensional structures from OCA and Proteopedia for ITGAM Gene

    Alternative splice isoforms for ITGAM Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ITGAM Gene

Protein Expression for ITGAM Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ITGAM Gene

  • Glycosylation at Asn1075, isoforms=21050, Asn1044, Asn1021, isoforms=2993, isoforms=2978, Asn946, Asn940, isoforms=2911, isoforms=2900, isoforms=2880, isoforms=2801, Asn734, Asn696, isoforms=2692, Asn469, Asn391, Asn240, and isoforms=286
  • Modification sites at PhosphoSitePlus

Other Protein References for ITGAM Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for ITGAM (CD11b/Integrin alpha M)
  • Abcam antibodies for ITGAM

No data available for DME Specific Peptides for ITGAM Gene

Domains & Families for ITGAM Gene

Gene Families for ITGAM Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • CD markers
  • Disease related genes
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for ITGAM Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ITGAM Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P11215

UniProtKB/Swiss-Prot:

ITAM_HUMAN :
  • The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
  • Belongs to the integrin alpha chain family.
Domain:
  • The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
Family:
  • Belongs to the integrin alpha chain family.
genes like me logo Genes that share domains with ITGAM: view

Function for ITGAM Gene

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  2. CRISPR
  3. miRNA
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  6. Cell Line

Molecular function for ITGAM Gene

UniProtKB/Swiss-Prot Function:
Integrin ITGAM/ITGB2 is implicated in various adhesive interactions of monocytes, macrophages and granulocytes as well as in mediating the uptake of complement-coated particles. It is identical with CR-3, the receptor for the iC3b fragment of the third complement component. It probably recognizes the R-G-D peptide in C3b. Integrin ITGAM/ITGB2 is also a receptor for fibrinogen, factor X and ICAM1. It recognizes P1 and P2 peptides of fibrinogen gamma chain. Regulates neutrophil migration (PubMed:28807980). In association with beta subunit ITGB2/CD18, required for CD177-PRTN3-mediated activation of TNF primed neutrophils (PubMed:21193407). May regulate phagocytosis-induced apoptosis in extravasated neutrophils (By similarity). May play a role in mast cell development (By similarity).
GENATLAS Biochemistry:
integrin,alpha M,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within cells,dimerizing with ITGB2 in vitronectin,fibrinogen,von Willebrand factor,thrombospondin,fibronectin,osteopontin,collagen

Phenotypes From GWAS Catalog for ITGAM Gene

Gene Ontology (GO) - Molecular Function for ITGAM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001851 complement component C3b binding ISS --
GO:0005515 protein binding IPI 15004192
GO:0031072 heat shock protein binding IPI 12496435
GO:0046872 metal ion binding IEA --
GO:0046982 protein heterodimerization activity NAS 20199584
genes like me logo Genes that share ontologies with ITGAM: view
genes like me logo Genes that share phenotypes with ITGAM: view

Animal Models for ITGAM Gene

MGI Knock Outs for ITGAM:

Animal Model Products

  • Taconic Biosciences Mouse Models for ITGAM

miRNA for ITGAM Gene

miRTarBase miRNAs that target ITGAM

Clone Products

  • Addgene plasmids for ITGAM
  • R&D Systems cDNA Clones for ITGAM (CD11b/Integrin alpha M)

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ITGAM Gene

Localization for ITGAM Gene

Subcellular locations from UniProtKB/Swiss-Prot for ITGAM Gene

Cell membrane; Single-pass type I membrane protein. Membrane raft; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ITGAM gene
Compartment Confidence
plasma membrane 5
extracellular 5
cytoskeleton 2
mitochondrion 2
nucleus 2
cytosol 2
lysosome 2
peroxisome 1
endoplasmic reticulum 1
endosome 1

Gene Ontology (GO) - Cellular Components for ITGAM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 25645918
GO:0005886 plasma membrane TAS --
GO:0008305 integrin complex TAS 2563162
GO:0009897 external side of plasma membrane NAS 20199584
GO:0009986 cell surface IDA 19234460
genes like me logo Genes that share ontologies with ITGAM: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ITGAM Gene

Pathways & Interactions for ITGAM Gene

genes like me logo Genes that share pathways with ITGAM: view

Pathways by source for ITGAM Gene

1 Cell Signaling Technology pathway for ITGAM Gene

Gene Ontology (GO) - Biological Process for ITGAM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001774 microglial cell activation ISS --
GO:0002376 immune system process IEA --
GO:0006911 phagocytosis, engulfment ISS --
GO:0007155 cell adhesion TAS 2563162
GO:0007229 integrin-mediated signaling pathway IEA --
genes like me logo Genes that share ontologies with ITGAM: view

No data available for SIGNOR curated interactions for ITGAM Gene

Drugs & Compounds for ITGAM Gene

Products:

  1. Drug

(60) Drugs for ITGAM Gene - From: ApexBio and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Leukadherin 1 Pharma CD11b/CD18 activator 0

(57) Additional Compounds for ITGAM Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ITGAM: view

Transcripts for ITGAM Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ITGAM Gene

(6) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(93) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITGAM Gene

Integrin, alpha M (complement component 3 receptor 3 subunit):
Representative Sequences:

Clone Products

  • Addgene plasmids for ITGAM
  • R&D Systems cDNA Clones for ITGAM (CD11b/Integrin alpha M)

Alternative Splicing Database (ASD) splice patterns (SP) for ITGAM Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^
SP1:
SP2: - - - - - - - - - - -
SP3: - - - - - - - - - - - - - - -

ExUns: 22a · 22b ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30
SP1: -
SP2: -
SP3:

Relevant External Links for ITGAM Gene

GeneLoc Exon Structure for
ITGAM
ECgene alternative splicing isoforms for
ITGAM

Expression for ITGAM Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITGAM Gene

mRNA expression in normal human tissues for ITGAM Gene
mRNA expression by BioGPS for ITGAM GenemRNA expression by GTEx for ITGAM Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ITGAM Gene

This gene is overexpressed in Whole Blood (x31.3).

Protein differential expression in normal tissues from HIPED for ITGAM Gene

This gene is overexpressed in Neutrophil (31.4), Nasal epithelium (9.4), and Monocytes (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ITGAM Gene



Protein tissue co-expression partners for ITGAM Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ITGAM Gene:

ITGAM

SOURCE GeneReport for Unigene cluster for ITGAM Gene:

Hs.172631

mRNA Expression by UniProt/SwissProt for ITGAM Gene:

P11215-ITAM_HUMAN
Tissue specificity: Predominantly expressed in monocytes and granulocytes (PubMed:1346576). Expressed in neutrophils (at protein level) (PubMed:21193407).

Evidence on tissue expression from TISSUES for ITGAM Gene

  • Blood(4.9)
  • Liver(4.5)
  • Spleen(4.3)
  • Bone marrow(4.2)
  • Lung(4)
  • Lymph node(3.6)
  • Heart(3.3)
  • Nervous system(3)
  • Intestine(2.9)
  • Eye(2.3)
  • Skin(2.2)
  • Muscle(2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for ITGAM Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • immune
  • integumentary
  • lymphatic
  • nervous
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • ear
  • eye
  • face
  • head
  • mouth
Thorax:
  • esophagus
  • heart
  • lung
Abdomen:
  • intestine
  • kidney
  • large intestine
  • pancreas
  • small intestine
  • spleen
  • stomach
Limb:
  • ankle
  • digit
  • elbow
  • finger
  • foot
  • hand
  • hip
  • knee
  • lower limb
  • shoulder
  • toe
  • upper limb
  • wrist
General:
  • blood
  • lymph node
  • skin
  • white blood cell
genes like me logo Genes that share expression patterns with ITGAM: view

Orthologs for ITGAM Gene

This gene was present in the common ancestor of chordates.

Orthologs for ITGAM Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia ITGAM 34 33
  • 99.25 (n)
 OneToOne
dog
(Canis familiaris)
 Mammalia ITGAM 34 33
  • 81.68 (n)
 OneToOne
cow
(Bos Taurus)
 Mammalia ITGAM 34 33
  • 81.34 (n)
 OneToOne
mouse
(Mus musculus)
 Mammalia Itgam 16 34 33
  • 78.61 (n)
rat
(Rattus norvegicus)
 Mammalia Itgam 33
  • 77.99 (n)
oppossum
(Monodelphis domestica)
 Mammalia -- 34
  • 60 (a)
 ManyToMany
-- 34
  • 59 (a)
 ManyToMany
-- 34
  • 57 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 34
  • 56 (a)
 ManyToMany
-- 34
  • 52 (a)
 ManyToMany
-- 34
  • 52 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 34
  • 47 (a)
 ManyToMany
-- 34
  • 47 (a)
 ManyToMany
-- 34
  • 44 (a)
 ManyToMany
tropical clawed frog
(Silurana tropicalis)
 Amphibia itgad 33
  • 52.48 (n)
zebrafish
(Danio rerio)
 Actinopterygii LOC101882585 33
  • 47.15 (n)
si:dkey-32n7.4 34
  • 36 (a)
 ManyToMany
Species where no ortholog for ITGAM was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ITGAM Gene

ENSEMBL:
Gene Tree for ITGAM (if available)
TreeFam:
Gene Tree for ITGAM (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ITGAM: view image

Paralogs for ITGAM Gene

Paralogs for ITGAM Gene

(4) SIMAP similar genes for ITGAM Gene using alignment to 3 proteins:

  • ITAM_HUMAN
  • H3BMV4_HUMAN
  • I3NI33_HUMAN
genes like me logo Genes that share paralogs with ITGAM: view

Variants for ITGAM Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for ITGAM Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs372291727 uncertain-significance, not provided 31,276,977(+) T/C coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs41321249 benign, not specified 31,330,103(+) C/A coding_sequence_variant, genic_downstream_transcript_variant, missense_variant, non_coding_transcript_variant
rs1000068561 -- 31,284,488(+) C/T intron_variant
rs1000069240 -- 31,261,515(+) T/G genic_upstream_transcript_variant, intron_variant
rs1000120561 -- 31,305,458(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ITGAM Gene

Variant ID Type Subtype PubMed ID
dgv503e214 CNV gain 21293372
esv1039007 CNV deletion 17803354
esv2052288 CNV deletion 18987734
esv2436135 CNV deletion 19546169
esv2714193 CNV deletion 23290073
esv3553318 CNV deletion 23714750
esv3553319 CNV deletion 23714750
nsv1061980 CNV gain 25217958
nsv1071284 CNV deletion 25765185
nsv1111132 CNV tandem duplication 24896259
nsv1138424 CNV deletion 24896259
nsv953803 CNV deletion 24416366
nsv958208 CNV deletion 24416366

Variation tolerance for ITGAM Gene

Residual Variation Intolerance Score: 26.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.35; 81.59% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ITGAM Gene

Human Gene Mutation Database (HGMD)
ITGAM
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGAM

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ITGAM Gene

Disorders for ITGAM Gene

MalaCards: The human disease database

(29) MalaCards diseases for ITGAM Gene - From: HGMD, OMIM, GTR, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
systemic lupus erythematosus 6
  • systemic lupus erythematosus, susceptibility to, 6
granulocytopenia
  • agranulocytosis
shwartzman phenomenon
  • shwartzman reaction
systemic lupus erythematosus 5
  • systemic lupus erythematosus, susceptibility to, 5
lymphocytic vasculitis
  • vasculitis lymphocytic, nodular
- elite association - COSMIC cancer census association via MalaCards
Search ITGAM in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

ITAM_HUMAN
  • Systemic lupus erythematosus 6 (SLEB6) [MIM:609939]: A chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. The disease is marked by a wide range of system dysfunctions, an elevated erythrocyte sedimentation rate, and the formation of LE cells in the blood or bone marrow. {ECO:0000269 PubMed:18204446, ECO:0000269 PubMed:18204448}. Note=Disease susceptibility may be associated with variations affecting the gene represented in this entry.

Additional Disease Information for ITGAM

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with ITGAM: view

No data available for Genatlas for ITGAM Gene

Publications for ITGAM Gene

  1. A nonsynonymous functional variant in integrin-alpha(M) (encoded by ITGAM) is associated with systemic lupus erythematosus. (PMID: 18204448) Nath SK … Harley JB (Nature genetics 2008) 3 4 44 58
  2. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN) … Kelly JA (Nature genetics 2008) 3 4 44 58
  3. The promoter of the CD11b gene directs myeloid-specific and developmentally regulated expression. (PMID: 1683702) Shelley CS … Arnaout MA (Proceedings of the National Academy of Sciences of the United States of America 1991) 3 4 22 58
  4. CD177 modulates human neutrophil migration through activation-mediated integrin and chemoreceptor regulation. (PMID: 28807980) Bai M … Nigrovic PA (Blood 2017) 3 4 58
  5. A targeted association study in systemic lupus erythematosus identifies multiple susceptibility alleles. (PMID: 20962850) Budarf ML … Rioux JD (Genes and immunity 2011) 3 44 58

Products for ITGAM Gene

  • Addgene plasmids for ITGAM

Sources for ITGAM Gene