Aliases for ITFG2-AS1 Gene

Data sources for ITFG2-AS1 Gene:

RNA type for ITFG2-AS1 Gene

lncRNA

Aliases for ITFG2-AS1 Gene

External Ids for ITFG2-AS1 Gene

Previous GeneCards Identifiers for ITFG2-AS1 Gene

  • GC12M002696
  • GC12M002697
  • GC12M002698
  • GC12M002699
  • GC12M002762

Summaries for ITFG2-AS1 Gene

GeneCards Summary for ITFG2-AS1 Gene

ITFG2-AS1 (ITFG2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ITFG2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ITFG2-AS1 Gene

Genomics for ITFG2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ITFG2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002811 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.2 -183 3 BCLAF1 SP1 ZNF654 NCOR1 ZNF207 MYC ZNF600 SSRP1 ZNF580 ATF2 ITFG2 ENSG00000258092 ITFG2-AS1 TULP3 DCP1B NRIP2 HSALNG0088606
GH12J002739 Promoter/Enhancer 0.8 EPDnew Ensembl 5.9 +72.8 72813 0.6 ZNF654 CTCF RAD21 SMC3 FOXA1 HLF TRIM22 LINC02371 LOC100422463 FKBP4 ITFG2 ITFG2-AS1 DCP1B
GH12J002794 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +17.5 17506 3.6 SP1 ZNF207 MYC ZNF600 IKZF1 ZNF592 POLR2A ZIC2 YY1 ZNF217 CBX3P4 FKBP4 piR-60051-020 ITFG2 TULP3 DCP1B ITFG2-AS1 ENSG00000258092 piR-43105-098
GH12J002803 Enhancer 0.8 Ensembl ENCODE 0.4 +8.2 8169 2.1 ZNF600 NFIC ZIC2 EBF1 BHLHE40 POLR2A IKZF1 GLIS1 ZNF660 NFE2L2 NRIP2 ENSG00000258092 FKBP4 ITFG2 ITFG2-AS1 piR-43105-098
GH12J002752 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +59.9 59923 1.6 ZNF600 KLF9 CEBPA NFIC MXD4 REST KLF11 SIN3A DEK ZFP64 IQSEC3P1 FKBP4 ITFG2 NRIP2 FOXM1 RHNO1 TULP3 piR-40110-100 ITFG2-AS1 DCP1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITFG2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ITFG2-AS1 Gene

Latest Assembly
chr12:2,695,764-2,812,924
(GRCh38/hg38)
Size:
117,161 bases
Orientation:
Minus strand

Previous Assembly
chr12:2,851,792-2,922,090
(GRCh37/hg19 by Entrez Gene)
Size:
70,299 bases
Orientation:
Minus strand

chr12:2,851,792-2,881,074
(GRCh37/hg19 by Ensembl)
Size:
29,283 bases
Orientation:
Minus strand

Genomic View for ITFG2-AS1 Gene

Genes around ITFG2-AS1 on UCSC Golden Path with GeneCards custom track
ITFG2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ITFG2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITFG2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITFG2-AS1 Gene

Proteins for ITFG2-AS1 Gene

Post-translational modifications for ITFG2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITFG2-AS1 Gene

Domains & Families for ITFG2-AS1 Gene

Gene Families for ITFG2-AS1 Gene

genes like me logo Genes that share domains with ITFG2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ITFG2-AS1 Gene

Function for ITFG2-AS1 Gene

Phenotypes From GWAS Catalog for ITFG2-AS1 Gene

genes like me logo Genes that share phenotypes with ITFG2-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITFG2-AS1 Gene

Localization for ITFG2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITFG2-AS1 Gene

Pathways & Interactions for ITFG2-AS1 Gene

PathCards logo

SuperPathways for ITFG2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ITFG2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ITFG2-AS1 Gene

Drugs & Compounds for ITFG2-AS1 Gene

No Compound Related Data Available

Transcripts for ITFG2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ITFG2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000D5B51E_9606 lncRNA 968 3

Ensembl: ENST00000636122 (view in UCSC) ,

LncBook: HSALNT0184266,

LNCipedia: ITFG2-AS1:35,

URS0000D59534_9606 lncRNA 634 3

Ensembl: ENST00000540093 (view in UCSC) ,

LncBook: HSALNT0184271,

LNCipedia: ITFG2-AS1:28,

URS0000BC45F8_9606 lncRNA 652 1

RefSeq: NR_146317,

URS0000BC43EB_9606 lncRNA 550 1

RefSeq: NR_146318,

URS00008C3A11_9606 lncRNA 1077 3

LncBook: HSALNT0184276,

LNCipedia: ITFG2-AS1:38,

NONCODE: NONHSAT025472.2,

ITFG2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ITFG2-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ITFG2-AS1 Gene

No ASD Table

Relevant External Links for ITFG2-AS1 Gene

GeneLoc Exon Structure for
ITFG2-AS1

Expression for ITFG2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ITFG2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITFG2-AS1 Gene

Orthologs for ITFG2-AS1 Gene

Evolution for ITFG2-AS1 Gene

ENSEMBL:
Gene Tree for ITFG2-AS1 (if available)
TreeFam:
Gene Tree for ITFG2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for ITFG2-AS1

No data available for Orthologs for ITFG2-AS1 Gene

Paralogs for ITFG2-AS1 Gene

No data available for Paralogs for ITFG2-AS1 Gene

Variants for ITFG2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ITFG2-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs142587247 Likely Benign: not provided 2,797,166(-) A/C
NM_002014.4(FKBP4):c.134A>C (p.Glu45Ala)
MISSENSE
rs1803817 Benign: not provided 2,803,240(-) G/C
NM_002014.4(FKBP4):c.1362G>C (p.Gln454His)
MISSENSE
rs181882117 Benign: not provided 2,800,035(-) G/A
NM_002014.4(FKBP4):c.763-4G>A
INTRON
rs374042199 Benign: not provided 2,799,114(-) A/C
NM_002014.4(FKBP4):c.541A>C (p.Lys181Gln)
MISSENSE
rs374757727 Benign: not provided 2,801,224(-) G/A
NM_002014.4(FKBP4):c.1140G>A (p.Leu380=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ITFG2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ITFG2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv19n68 CNV loss 17160897
esv1495898 CNV insertion 17803354
esv1502269 CNV insertion 17803354
esv1983049 CNV deletion 18987734
esv25528 CNV loss 19812545
esv2674639 CNV deletion 23128226
esv2745420 CNV deletion 23290073
esv2745421 CNV deletion 23290073
esv2745422 CNV deletion 23290073
esv2745423 CNV deletion 23290073
esv2745424 CNV deletion 23290073
esv3628319 CNV loss 21293372
esv3628320 CNV loss 21293372
esv997004 CNV insertion 20482838
nsv1047874 CNV gain 25217958
nsv1112252 CNV deletion 24896259
nsv470260 CNV gain 18288195

Additional Variant Information for ITFG2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITFG2-AS1
Leiden Open Variation Database (LOVD)
ITFG2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITFG2-AS1 Gene

Disorders for ITFG2-AS1 Gene

Additional Disease Information for ITFG2-AS1

No disorders were found for ITFG2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITFG2-AS1 Gene

Publications for ITFG2-AS1 Gene

  1. Identification of antisense long noncoding RNAs that function as SINEUPs in human cells. (PMID: 27646849) Schein A … Carninci P (Scientific reports 2016) 2 3
  2. Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae. (PMID: 19197348) Lowe JK … Friedman JM (PLoS genetics 2009) 3
  3. cDNA microarray analysis of altered gene expression in Ara-C-treated leukemia cells. (PMID: 12951057) Takagaki K … Yano J (Biochemical and biophysical research communications 2003) 3

Products for ITFG2-AS1 Gene

Sources for ITFG2-AS1 Gene