Aliases for ITCH-IT1 Gene

Subcategory (RNA class) for ITCH-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ITCH-IT1 Gene

  • ITCH Intronic Transcript 1 2 3 5
  • ITCH-IT1 2 5 165
  • ITCH Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG031651.2 91
  • HSALNG0129713 164

External Ids for ITCH-IT1 Gene

Previous GeneCards Identifiers for ITCH-IT1 Gene

  • GC00U933815
  • GC20P033039

Summaries for ITCH-IT1 Gene

GeneCards Summary for ITCH-IT1 Gene

ITCH-IT1 (ITCH Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ITCH-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ITCH-IT1 Gene

Genomics for ITCH-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ITCH-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J034450 Enhancer 0.3 ENCODE 600.7 -0.8 -779 0.2 MNT HLF ITCH-IT1 ITCH ITCH-AS1 DYNLRB1 LOC107985381
GH20J034449 Enhancer 0.2 Ensembl 600.7 -1.3 -1329 0.8 ITCH-IT1 MAP1LC3A ITCH MMP24 ITCH-AS1 DYNLRB1 LOC107985381
GH20J034399 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.9 -46.9 -46911 9 HNRNPL GATAD2A REST TFE3 NFKBIZ RCOR2 ZNF7 PRDM1 RXRB IRF2 CDC42P1 lnc-AHCY-5 MAP1LC3A ITCH ITCH-AS1 ITCH-IT1 TP53INP2 PXMP4 piR-57460-403 LOC107985381
GH20J034414 Enhancer 1.1 Ensembl ENCODE dbSUPER 13 -35.4 -35429 2.6 SP1 TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A DPF2 RELB piR-57460-403 MAP1LC3A PIGU ITCH-AS1 ITCH-IT1 ITCH CDC42P1 LOC107985381 lnc-ASIP-2 DYNLRB1
GH20J034411 Enhancer 0.6 Ensembl dbSUPER 13 -38.4 -38429 1.4 ZNF316 RCOR1 PRDM6 ITCH-AS1 ITCH-IT1 ITCH piR-57460-403 CDC42P1 lnc-ASIP-2 LOC107985381 DYNLRB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITCH-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ITCH-IT1 Gene

Genomic Locations for ITCH-IT1 Gene
chr20:34,450,930-34,454,553
(GRCh38/hg38)
Size:
3,624 bases
Orientation:
Plus strand
chr20:33,038,735-33,042,357
(GRCh37/hg19)
Size:
3,623 bases
Orientation:
Plus strand

Genomic View for ITCH-IT1 Gene

Genes around ITCH-IT1 on UCSC Golden Path with GeneCards custom track
ITCH-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ITCH-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITCH-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITCH-IT1 Gene

Proteins for ITCH-IT1 Gene

Post-translational modifications for ITCH-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITCH-IT1 Gene

Domains & Families for ITCH-IT1 Gene

Gene Families for ITCH-IT1 Gene

genes like me logo Genes that share domains with ITCH-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ITCH-IT1 Gene

Function for ITCH-IT1 Gene

Phenotypes From GWAS Catalog for ITCH-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITCH-IT1 Gene

Localization for ITCH-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITCH-IT1 Gene

Pathways & Interactions for ITCH-IT1 Gene

PathCards logo

SuperPathways for ITCH-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ITCH-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ITCH-IT1 Gene

Drugs & Compounds for ITCH-IT1 Gene

No Compound Related Data Available

Transcripts for ITCH-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ITCH-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005756BD_9606 lncRNA 208 5

HGNC: 41397,

Ensembl: ENST00000418598 (view in UCSC) ,

LncBook: HSALNT0266582,

LNCipedia: ITCH-IT1:1,

NONCODE: NONHSAT079443.2,

URS00009BAA92_9606 lncRNA 208 2

LncBook: HSALNT0266583,

NONCODE: NONHSAT188675.1,

ITCH-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ITCH-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITCH-IT1 Gene

No ASD Table

Relevant External Links for ITCH-IT1 Gene

GeneLoc Exon Structure for
ITCH-IT1

Expression for ITCH-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITCH-IT1 Gene

genes like me logo Genes that share expression patterns with ITCH-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITCH-IT1 Gene

Orthologs for ITCH-IT1 Gene

Evolution for ITCH-IT1 Gene

ENSEMBL:
Gene Tree for ITCH-IT1 (if available)
TreeFam:
Gene Tree for ITCH-IT1 (if available)

No data available for Orthologs for ITCH-IT1 Gene

Paralogs for ITCH-IT1 Gene

No data available for Paralogs for ITCH-IT1 Gene

Variants for ITCH-IT1 Gene

Additional Variant Information for ITCH-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITCH-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITCH-IT1 Gene

Disorders for ITCH-IT1 Gene

No disorders were found for ITCH-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITCH-IT1 Gene

Publications for ITCH-IT1 Gene

  1. CircRNA circ-ITCH suppresses papillary thyroid cancer progression through miR-22-3p/CBL/β-catenin pathway. (PMID: 30190130) Wang M … Cong L (Biochemical and biophysical research communications 2018) 3
  2. cir-ITCH plays an inhibitory role in colorectal cancer by regulating the Wnt/β-catenin pathway. (PMID: 26110611) Huang G … Chen X (PloS one 2015) 3
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for ITCH-IT1 Gene

Products for ITCH-IT1 Gene

Sources for ITCH-IT1 Gene