Aliases for ITCH-AS1 Gene

Subcategory (RNA class) for ITCH-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ITCH-AS1 Gene

  • ITCH Antisense RNA 1 2 3 5
  • ITCH-AS1 2 5 165
  • ITCH Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG031650.2 91
  • HSALNG0129712 164

External Ids for ITCH-AS1 Gene

Previous GeneCards Identifiers for ITCH-AS1 Gene

  • GC00U933528
  • GC20M033030

Summaries for ITCH-AS1 Gene

GeneCards Summary for ITCH-AS1 Gene

ITCH-AS1 (ITCH Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ITCH-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ITCH-AS1 Gene

Genomics for ITCH-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ITCH-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J034399 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.9 +38.0 38006 9 HNRNPL GATAD2A REST TFE3 NFKBIZ RCOR2 ZNF7 PRDM1 RXRB IRF2 CDC42P1 lnc-AHCY-5 MAP1LC3A ITCH ITCH-AS1 ITCH-IT1 TP53INP2 PXMP4 piR-57460-403 LOC107985381
GH20J034414 Enhancer 1.1 Ensembl ENCODE dbSUPER 13 +26.5 26524 2.6 SP1 TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A DPF2 RELB piR-57460-403 MAP1LC3A PIGU ITCH-AS1 ITCH-IT1 ITCH CDC42P1 LOC107985381 lnc-ASIP-2 DYNLRB1
GH20J034411 Enhancer 0.6 Ensembl dbSUPER 13 +29.5 29524 1.4 ZNF316 RCOR1 PRDM6 ITCH-AS1 ITCH-IT1 ITCH piR-57460-403 CDC42P1 lnc-ASIP-2 LOC107985381 DYNLRB1
GH20J034410 Enhancer 0.4 ENCODE dbSUPER 13 +31.5 31495 0.2 MNT ITCH-AS1 ITCH-IT1 ITCH CDC42P1 piR-57460-403 LOC107985381 lnc-ASIP-2 DYNLRB1
GH20J034413 Enhancer 0.3 Ensembl dbSUPER 13 +28.5 28524 0.2 ITCH-AS1 ITCH-IT1 ITCH piR-57460-403 CDC42P1 LOC107985381 lnc-ASIP-2 DYNLRB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ITCH-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ITCH-AS1 Gene

Genomic Locations for ITCH-AS1 Gene
chr20:34,441,592-34,442,025
(GRCh38/hg38)
Size:
434 bases
Orientation:
Minus strand
chr20:33,029,397-33,029,830
(GRCh37/hg19)
Size:
434 bases
Orientation:
Minus strand

Genomic View for ITCH-AS1 Gene

Genes around ITCH-AS1 on UCSC Golden Path with GeneCards custom track
ITCH-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ITCH-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITCH-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITCH-AS1 Gene

Proteins for ITCH-AS1 Gene

Post-translational modifications for ITCH-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITCH-AS1 Gene

Domains & Families for ITCH-AS1 Gene

Gene Families for ITCH-AS1 Gene

genes like me logo Genes that share domains with ITCH-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ITCH-AS1 Gene

Function for ITCH-AS1 Gene

Phenotypes From GWAS Catalog for ITCH-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITCH-AS1 Gene

Localization for ITCH-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITCH-AS1 Gene

Pathways & Interactions for ITCH-AS1 Gene

PathCards logo

SuperPathways for ITCH-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ITCH-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ITCH-AS1 Gene

Drugs & Compounds for ITCH-AS1 Gene

No Compound Related Data Available

Transcripts for ITCH-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ITCH-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000058F37B_9606 lncRNA 299 5

HGNC: 40659,

Ensembl: ENST00000454205 (view in UCSC) ,

LncBook: HSALNT0266580,

LNCipedia: ITCH-AS1:1,

NONCODE: NONHSAT079442.2,

ITCH-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITCH-AS1 Gene

No ASD Table

Relevant External Links for ITCH-AS1 Gene

GeneLoc Exon Structure for
ITCH-AS1

No data available for mRNA/cDNA for ITCH-AS1 Gene

Expression for ITCH-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITCH-AS1 Gene

genes like me logo Genes that share expression patterns with ITCH-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITCH-AS1 Gene

Orthologs for ITCH-AS1 Gene

Evolution for ITCH-AS1 Gene

ENSEMBL:
Gene Tree for ITCH-AS1 (if available)
TreeFam:
Gene Tree for ITCH-AS1 (if available)

No data available for Orthologs for ITCH-AS1 Gene

Paralogs for ITCH-AS1 Gene

No data available for Paralogs for ITCH-AS1 Gene

Variants for ITCH-AS1 Gene

Additional Variant Information for ITCH-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITCH-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITCH-AS1 Gene

Disorders for ITCH-AS1 Gene

No disorders were found for ITCH-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITCH-AS1 Gene

Publications for ITCH-AS1 Gene

No publications were found for ITCH-AS1 Gene.

No data available for Mastermind for ITCH-AS1 Gene

Products for ITCH-AS1 Gene

Sources for ITCH-AS1 Gene