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Aliases for ISX-AS1 Gene

Subcategory (RNA class) for ISX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ISX-AS1 Gene

  • ISX Antisense RNA 1 2 3 5

External Ids for ISX-AS1 Gene

Previous GeneCards Identifiers for ISX-AS1 Gene

  • GC22M034922

Summaries for ISX-AS1 Gene

GeneCards Summary for ISX-AS1 Gene

ISX-AS1 (ISX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ISX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISX-AS1 Gene

Genomics for ISX-AS1 Gene

GeneHancer (GH) Regulatory Elements for ISX-AS1 Gene

Promoters and enhancers for ISX-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J035064 Promoter/Enhancer 1.3 EPDnew ENCODE 7.6 -64.0 -63959 4.7 HDAC1 ELF3 PKNOX1 FOXA2 BATF IRF4 RFX5 ATF7 IKZF2 RUNX3 ISX ISX-AS1 GC22P035086
GH22J035130 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 6.7 -128.8 -128781 1.5 HDAC1 TEAD4 TAL1 TCF12 CTBP1 NCOR1 ADNP EED CBFA2T2 NFE2 ISX-AS1 GC22P035126 ENSG00000238153 LINC01399
GH22J035047 Enhancer 0.4 FANTOM5 17.3 -44.6 -44613 0.2 RELA ISX-AS1 TOM1 HMOX1 ISX
GH22J035102 Enhancer 0.8 ENCODE dbSUPER 8.1 -100.7 -100740 2.1 CTCF EBF1 FEZF1 REST OSR2 PRDM6 MTA1 IKZF1 EED ZBTB33 ISX-AS1 GC22M035079 GC22P035120
GH22J035115 Enhancer 0.6 ENCODE dbSUPER 7.2 -114.2 -114184 2.4 CTCF ZBTB40 ISX-AS1 GC22P035120 GC22M035079
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ISX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ISX-AS1 Gene

Genomic Locations for ISX-AS1 Gene
chr22:34,997,719-35,002,862
(GRCh38/hg38)
Size:
5,144 bases
Orientation:
Minus strand
chr22:35,318,599-35,468,259
(GRCh37/hg19)
Size:
149,661 bases
Orientation:
Minus strand

Genomic View for ISX-AS1 Gene

Genes around ISX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISX-AS1 Gene

Function for ISX-AS1 Gene

Phenotypes From GWAS Catalog for ISX-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISX-AS1 Gene

Localization for ISX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ISX-AS1 Gene

Pathways & Interactions for ISX-AS1 Gene

SuperPathways for ISX-AS1 Gene

No Data Available

Interacting Proteins for ISX-AS1 Gene

Gene Ontology (GO) - Biological Process for ISX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISX-AS1 Gene

Drugs & Compounds for ISX-AS1 Gene

No Compound Related Data Available

Transcripts for ISX-AS1 Gene

mRNA/cDNA for ISX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ISX-AS1 Gene

No ASD Table

Relevant External Links for ISX-AS1 Gene

GeneLoc Exon Structure for
ISX-AS1
ECgene alternative splicing isoforms for
ISX-AS1

Expression for ISX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISX-AS1 Gene

genes like me logo Genes that share expression patterns with ISX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ISX-AS1 Gene

Orthologs for ISX-AS1 Gene

Evolution for ISX-AS1 Gene

ENSEMBL:
Gene Tree for ISX-AS1 (if available)
TreeFam:
Gene Tree for ISX-AS1 (if available)

No data available for Orthologs for ISX-AS1 Gene

Paralogs for ISX-AS1 Gene

No data available for Paralogs for ISX-AS1 Gene

Variants for ISX-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISX-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000026986 -- 34,962,925(-) C/A intron_variant
rs1000053202 -- 34,920,277(-) C/T intron_variant
rs1000073144 -- 34,932,814(-) T/C intron_variant
rs1000109067 -- 34,999,117(-) T/C intron_variant
rs1000118634 -- 34,999,943(-) G/T intron_variant

Additional Variant Information for ISX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ISX-AS1 Gene

Disorders for ISX-AS1 Gene

Additional Disease Information for ISX-AS1

No disorders were found for ISX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISX-AS1 Gene

Publications for ISX-AS1 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 58

Products for ISX-AS1 Gene

Sources for ISX-AS1 Gene

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