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Aliases for ISM1-AS1 Gene

Subcategory (RNA class) for ISM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ISM1-AS1 Gene

  • ISM1 Antisense RNA 1 2 3 5
  • ISM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ISM1-AS1 Gene

Previous GeneCards Identifiers for ISM1-AS1 Gene

  • GC20M013220

Summaries for ISM1-AS1 Gene

GeneCards Summary for ISM1-AS1 Gene

ISM1-AS1 (ISM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ISM1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISM1-AS1 Gene

Genomics for ISM1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ISM1-AS1 Gene

Promoters and enhancers for ISM1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I013241 Enhancer 0.4 FANTOM5 550.8 -1.5 -1509 0 CREB1 ATF2 ISM1-AS1 ENSG00000225956 LOC105372539 ISM1
GH20I013246 Enhancer 0.9 Ensembl ENCODE 11.8 -8.0 -8005 2.3 HDGF FOXA2 SMAD1 IRF4 ATF7 ETV6 BCLAF1 HOMEZ IKZF2 RUNX3 ISM1-AS1 ISM1 ENSG00000225956 ENSG00000278153
GH20I013230 Enhancer 1 FANTOM5 Ensembl ENCODE 8.3 +8.4 8358 1.4 ZFHX2 RFX1 GLIS1 WT1 EGR2 ENSG00000225956 ISM1-AS1 ISM1 TASP1 LOC105372539
GH20I013274 Enhancer 0.6 Ensembl ENCODE 11 -34.8 -34752 0.4 USF1 SIN3A ENSG00000225956 ISM1-AS1 ISM1 ENSG00000278153
GH20I013285 Enhancer 0.6 ENCODE 10.8 -46.6 -46590 2 ESRRA USF1 FOXA2 ZNF384 MNT RAD21 FOXA1 GATA3 JUND PRDM4 ISM1-AS1 ENSG00000225956 ISM1 ENSG00000278153
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ISM1-AS1 Gene

Genomic Locations for ISM1-AS1 Gene
2,268 bases
Minus strand

Genomic View for ISM1-AS1 Gene

Genes around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISM1-AS1 Gene

Proteins for ISM1-AS1 Gene

Post-translational modifications for ISM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISM1-AS1 Gene

Domains & Families for ISM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISM1-AS1 Gene

Function for ISM1-AS1 Gene

Phenotypes From GWAS Catalog for ISM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISM1-AS1 Gene

Localization for ISM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ISM1-AS1 Gene

Pathways & Interactions for ISM1-AS1 Gene

SuperPathways for ISM1-AS1 Gene

No Data Available

Interacting Proteins for ISM1-AS1 Gene

Gene Ontology (GO) - Biological Process for ISM1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ISM1-AS1 Gene

Drugs & Compounds for ISM1-AS1 Gene

No Compound Related Data Available

Transcripts for ISM1-AS1 Gene

mRNA/cDNA for ISM1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ISM1-AS1 Gene

ISM1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ISM1-AS1 Gene

No ASD Table

Relevant External Links for ISM1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ISM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ISM1-AS1 Gene

This gene is overexpressed in Testis (x13.5).

SOURCE GeneReport for Unigene cluster for ISM1-AS1 Gene:

genes like me logo Genes that share expression patterns with ISM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ISM1-AS1 Gene

Orthologs for ISM1-AS1 Gene

Evolution for ISM1-AS1 Gene

Gene Tree for ISM1-AS1 (if available)
Gene Tree for ISM1-AS1 (if available)

No data available for Orthologs for ISM1-AS1 Gene

Paralogs for ISM1-AS1 Gene

No data available for Paralogs for ISM1-AS1 Gene

Variants for ISM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISM1-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000122756 -- 13,240,974(-) T/C upstream_transcript_variant
rs1000234650 -- 13,241,314(-) A/G upstream_transcript_variant
rs1001733547 -- 13,241,386(-) T/C upstream_transcript_variant
rs1001889273 -- 13,237,405(-) A/G downstream_transcript_variant
rs1002080713 -- 13,238,860(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ISM1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv518184 CNV gain 19592680
nsv1060853 CNV gain 25217958
nsv1058035 CNV loss 25217958
esv3893288 CNV gain 25118596
dgv4247n100 CNV gain 25217958

Additional Variant Information for ISM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ISM1-AS1 Gene

Disorders for ISM1-AS1 Gene

Additional Disease Information for ISM1-AS1

No disorders were found for ISM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISM1-AS1 Gene

Publications for ISM1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ISM1-AS1 Gene

Sources for ISM1-AS1 Gene

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