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Aliases for ISCA2P1 Gene

Subcategory (RNA class) for ISCA2P1 Gene

lncRNA

Aliases for ISCA2P1 Gene

  • Iron-Sulfur Cluster Assembly 2 Pseudogene 1 2 3 5
  • Iron-Sulfur Cluster Assembly 2 Homolog (S. Cerevisiae) Pseudogene 1 2

External Ids for ISCA2P1 Gene

ORGUL Members for ISCA2P1 Gene

Previous GeneCards Identifiers for ISCA2P1 Gene

  • GC22M027041
  • GC22M009988

Summaries for ISCA2P1 Gene

GeneCards Summary for ISCA2P1 Gene

ISCA2P1 (Iron-Sulfur Cluster Assembly 2 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for ISCA2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISCA2P1 Gene

Genomics for ISCA2P1 Gene

GeneHancer (GH) Regulatory Elements for ISCA2P1 Gene

Promoters and enhancers for ISCA2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I026640 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.9 1932 5.2 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A YBX1 ZNF2 YY1 POLR2B ISCA2P1 TFIP11 MIATNB RPL15P22 TPST2 LOC100507599 CRYBB1 CRYBA4 HMGB1P10 MIR548J
GH22I026631 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +12.7 12697 3 ATF1 SMAD1 ARNT NCOA2 TCF12 POLR2B ZNF766 GATA2 ATF7 CAVIN1 TPST2 HMGB1P10 CRYBA4 MIR548J TFIP11 HPS4 SRRD MIATNB CRYBB1 ISCA2P1
GH22I026628 Enhancer 0.6 ENCODE 0.4 +16.2 16215 0.8 USF1 L3MBTL2 NFYC USF2 REST FOS SPI1 MGA TPST2 CRYBB1 ISCA2P1 CRYBA4
GH22I026621 Promoter 0.5 EPDnew 0.3 +23.4 23392 0.1 CRYBA4 CRYBB1 ISCA2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ISCA2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ISCA2P1 Gene

Genomic Locations for ISCA2P1 Gene
chr22:26,644,887-26,645,336
(GRCh38/hg38)
Size:
450 bases
Orientation:
Minus strand
chr22:27,040,851-27,041,300
(GRCh37/hg19)

Genomic View for ISCA2P1 Gene

Genes around ISCA2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISCA2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISCA2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISCA2P1 Gene

Proteins for ISCA2P1 Gene

Post-translational modifications for ISCA2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISCA2P1 Gene

Domains & Families for ISCA2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISCA2P1 Gene

Function for ISCA2P1 Gene

Phenotypes From GWAS Catalog for ISCA2P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISCA2P1 Gene

Localization for ISCA2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ISCA2P1 Gene

Pathways & Interactions for ISCA2P1 Gene

SuperPathways for ISCA2P1 Gene

No Data Available

Interacting Proteins for ISCA2P1 Gene

Gene Ontology (GO) - Biological Process for ISCA2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISCA2P1 Gene

Drugs & Compounds for ISCA2P1 Gene

No Compound Related Data Available

Transcripts for ISCA2P1 Gene

mRNA/cDNA for ISCA2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ISCA2P1 Gene

No ASD Table

Relevant External Links for ISCA2P1 Gene

GeneLoc Exon Structure for
ISCA2P1
ECgene alternative splicing isoforms for
ISCA2P1

Expression for ISCA2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISCA2P1 Gene

mRNA differential expression in normal tissues according to GTEx for ISCA2P1 Gene

This gene is overexpressed in Pituitary (x6.4).

NURSA nuclear receptor signaling pathways regulating expression of ISCA2P1 Gene:

ISCA2P1
genes like me logo Genes that share expression patterns with ISCA2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ISCA2P1 Gene

Orthologs for ISCA2P1 Gene

Evolution for ISCA2P1 Gene

ENSEMBL:
Gene Tree for ISCA2P1 (if available)
TreeFam:
Gene Tree for ISCA2P1 (if available)

No data available for Orthologs for ISCA2P1 Gene

Paralogs for ISCA2P1 Gene

No data available for Paralogs for ISCA2P1 Gene

Variants for ISCA2P1 Gene

Additional Variant Information for ISCA2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISCA2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ISCA2P1 Gene

Disorders for ISCA2P1 Gene

Additional Disease Information for ISCA2P1

Genetic Association Database
(GAD)

No disorders were found for ISCA2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISCA2P1 Gene

Publications for ISCA2P1 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58
  2. A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project. (PMID: 20031603) Marroni F … EUROSPAN Consortium (Circulation. Cardiovascular genetics 2009) 44 58

Products for ISCA2P1 Gene

Sources for ISCA2P1 Gene

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