Aliases for IRAG1-AS1 Gene

Subcategory (RNA class) for IRAG1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for IRAG1-AS1 Gene

  • IRAG1 Antisense RNA 1 2 3
  • MRVI1-AS1 2 3 5
  • MRVI1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MRVI1 Antisense RNA 1 2 5
  • NONHSAG007643.2 91
  • HSALNG0082653 164
  • Lnc-AMPD3-53 165

External Ids for IRAG1-AS1 Gene

Previous HGNC Symbols for IRAG1-AS1 Gene

  • MRVI1-AS1

Summaries for IRAG1-AS1 Gene

GeneCards Summary for IRAG1-AS1 Gene

IRAG1-AS1 (IRAG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IRAG1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IRAG1-AS1 Gene

Genomics for IRAG1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IRAG1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010538 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 635 -0.4 -377 3.1 BRCA1 SP1 CREB1 CTCF HNRNPL PRDM10 ZNF629 TFE3 RFX1 ZNF692 IRAG1-AS1 RNF141 ZBED5 CTR9 lnc-MTRNR2L8-1 MTRNR2L8 lnc-AMPD3-3
GH11J010588 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 30.2 +50.9 50895 7.3 LEF1 IKZF1 JUND FOXA1 DDX20 MTA2 PKNOX1 ZNF24 DPF2 HDAC1 IRAG1-AS1 RNF141 IRAG1 AMPD3 lnc-RNF141-1 LYVE1
GH11J010598 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 17.4 +63.9 63912 12.2 GATAD2A RCOR2 PKNOX1 ZNF24 SOX6 CEBPA FOXK2 MNT NRF1 SOX13 IRAG1 IRAG1-AS1 CTR9 RNF141 LYVE1 lnc-RNF141-1
GH11J010521 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 22.8 -15.0 -14956 8.6 ATF7 ZNF512 JUND IKZF2 PKNOX1 EED DPF2 RUNX3 BCLAF1 JUN IRAG1-AS1 IRAG1 LYVE1 RNF141 AMPD3 lnc-MTRNR2L8-1 MTRNR2L8 lnc-AMPD3-3
GH11J010563 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 15 +25.5 25495 5.7 CTCF IKZF1 ZIC2 PKNOX1 REST SP1 CEBPB CTBP1 ZBTB26 ZNF316 LYVE1 IRAG1-AS1 IRAG1 RNF141 lnc-RNF141-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IRAG1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IRAG1-AS1 Gene

Genomic Locations for IRAG1-AS1 Gene
chr11:10,541,123-10,599,936
(GRCh38/hg38)
Size:
58,814 bases
Orientation:
Plus strand
chr11:10,562,787-10,621,479
(GRCh37/hg19)
Size:
58,693 bases
Orientation:
Plus strand

Genomic View for IRAG1-AS1 Gene

Genes around IRAG1-AS1 on UCSC Golden Path with GeneCards custom track
IRAG1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
IRAG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IRAG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IRAG1-AS1 Gene

Proteins for IRAG1-AS1 Gene

Post-translational modifications for IRAG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IRAG1-AS1 Gene

Domains & Families for IRAG1-AS1 Gene

Gene Families for IRAG1-AS1 Gene

Suggested Antigen Peptide Sequences for IRAG1-AS1 Gene

GenScript: Design optimal peptide antigens:
  • LOC100129827 protein (Q8N6V7_HUMAN)
genes like me logo Genes that share domains with IRAG1-AS1: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IRAG1-AS1 Gene

Function for IRAG1-AS1 Gene

Phenotypes From GWAS Catalog for IRAG1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IRAG1-AS1 Gene

Localization for IRAG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IRAG1-AS1 Gene

Pathways & Interactions for IRAG1-AS1 Gene

PathCards logo

SuperPathways for IRAG1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IRAG1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IRAG1-AS1 Gene

Drugs & Compounds for IRAG1-AS1 Gene

No Compound Related Data Available

Transcripts for IRAG1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for IRAG1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042FA44_9606 lncRNA 829 3

Ensembl: ENST00000525578 (view in UCSC) ,

LncBook: HSALNT0171980,

NONCODE: NONHSAT017976.2,

URS000075B4AF_9606 lncRNA 661 2

HGNC: 43434,

RefSeq: NR_034093,

URS000075ED8C_9606 lncRNA 900 1

RefSeq: NR_046374,

URS0000EF4672_9606 lncRNA 836 1

Ensembl: ENST00000529979 (view in UCSC) ,

URS000075A59B_9606 lncRNA 800 1

RefSeq: NR_046375,

IRAG1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for IRAG1-AS1 Gene

7 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for IRAG1-AS1 Gene

No ASD Table

Relevant External Links for IRAG1-AS1 Gene

GeneLoc Exon Structure for
IRAG1-AS1

Expression for IRAG1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IRAG1-AS1

SOURCE GeneReport for Unigene cluster for IRAG1-AS1 Gene:

Hs.246769
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IRAG1-AS1 Gene

Orthologs for IRAG1-AS1 Gene

Evolution for IRAG1-AS1 Gene

ENSEMBL:
Gene Tree for IRAG1-AS1 (if available)
TreeFam:
Gene Tree for IRAG1-AS1 (if available)

No data available for Orthologs for IRAG1-AS1 Gene

Paralogs for IRAG1-AS1 Gene

No data available for Paralogs for IRAG1-AS1 Gene

Variants for IRAG1-AS1 Gene

Additional dbSNP identifiers (rs#s) for IRAG1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IRAG1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3579367 CNV loss 25503493
nsv1044011 CNV gain 25217958
nsv1137988 CNV deletion 24896259
nsv7675 CNV insertion 18451855
nsv819020 CNV loss 19587683
nsv832063 CNV loss 17160897

Additional Variant Information for IRAG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IRAG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for IRAG1-AS1 Gene

Disorders for IRAG1-AS1 Gene

No disorders were found for IRAG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IRAG1-AS1 Gene

Publications for IRAG1-AS1 Gene

  1. The MRVI1-AS1/ATF3 signaling loop sensitizes nasopharyngeal cancer cells to paclitaxel by regulating the Hippo-TAZ pathway. (PMID: 31273338) Zhu Y … Cao K (Oncogene 2019) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for IRAG1-AS1 Gene

Sources for IRAG1-AS1 Gene