Aliases for IPO9-AS1 Gene

Subcategory (RNA class) for IPO9-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for IPO9-AS1 Gene

  • IPO9 Antisense RNA 1 2 3 5
  • IPO9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • IPO9-AS1 2 170
  • NONHSAG003938 94
  • HSALNG0009674 169

External Ids for IPO9-AS1 Gene

Summaries for IPO9-AS1 Gene

GeneCards Summary for IPO9-AS1 Gene

IPO9-AS1 (IPO9 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IPO9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IPO9-AS1 Gene

Genomics for IPO9-AS1 Gene

GeneHancer (GH) Regulatory Elements for IPO9-AS1 Gene

Promoters and enhancers for IPO9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J201828 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 769.2 -0.1 -142 3 ZNF24 SP1 CTCF ZBTB6 SMARCE1 POLR2A HCFC1 MYC NFYC L3MBTL2 IPO9-AS1 IPO9 KDM5B ENSG00000235121 RNPEP ENSG00000235449 LMOD1 ENSG00000236439 SHISA4 TIMM17A
GH01J201827 Promoter/Enhancer 0.7 Ensembl dbSUPER 750.6 +1.7 1658 0.2 ZSCAN5C CEBPB IPO9 IPO9-AS1 MIR1231
GH01J201832 Promoter 0.3 Ensembl 750.6 -1.9 -1942 0.2 IPO9-AS1 SHISA4 TIMM17A ENSG00000235121 RNU6-501P NAV1 IPO9 MIR6739
GH01J201435 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 63.4 +393.4 393428 1.5 ZNF785 SP1 ZBTB40 CTCF SMARCE1 ZNF133 CC2D1A L3MBTL2 RAD21 DACH1 IPO9 IPO9-AS1 RNPEP ENSG00000224818 DDX59 CAMSAP2 ENSG00000235121 PHLDA3 LAD1 CSRP1
GH01J202157 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 38.6 -332.6 -332554 8.9 SP1 ZBTB40 SMARCE1 NR2F6 MYC ETV6 RELA L3MBTL2 RBM39 MAX PTPN7 lnc-ARL8A-1 RNPEP IPO9 KDM5B HNRNPA1P59 IPO9-AS1 ELF3-AS1 ENSG00000236439 LMOD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IPO9-AS1 Gene

Genomic Locations for IPO9-AS1 Gene
chr1:201,688,256-201,829,559
(GRCh38/hg38)
Size:
141,304 bases
Orientation:
Minus strand
chr1:201,657,387-201,798,687
(GRCh37/hg19)
Size:
141,301 bases
Orientation:
Minus strand

Genomic View for IPO9-AS1 Gene

Genes around IPO9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPO9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPO9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO9-AS1 Gene

Proteins for IPO9-AS1 Gene

Post-translational modifications for IPO9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPO9-AS1 Gene

Domains & Families for IPO9-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IPO9-AS1 Gene

Function for IPO9-AS1 Gene

Phenotypes From GWAS Catalog for IPO9-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPO9-AS1 Gene

Localization for IPO9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IPO9-AS1 Gene

Pathways & Interactions for IPO9-AS1 Gene

PathCards logo

SuperPathways for IPO9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IPO9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IPO9-AS1 Gene

Drugs & Compounds for IPO9-AS1 Gene

No Compound Related Data Available

Transcripts for IPO9-AS1 Gene

mRNA/cDNA for IPO9-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(6) LncBook transcripts :
(9) LNCipedia transcripts :
(3) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for IPO9-AS1 Gene

No ASD Table

Relevant External Links for IPO9-AS1 Gene

GeneLoc Exon Structure for
IPO9-AS1
ECgene alternative splicing isoforms for
IPO9-AS1

Expression for IPO9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IPO9-AS1 Gene

genes like me logo Genes that share expression patterns with IPO9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IPO9-AS1 Gene

Orthologs for IPO9-AS1 Gene

Evolution for IPO9-AS1 Gene

ENSEMBL:
Gene Tree for IPO9-AS1 (if available)
TreeFam:
Gene Tree for IPO9-AS1 (if available)

No data available for Orthologs for IPO9-AS1 Gene

Paralogs for IPO9-AS1 Gene

No data available for Paralogs for IPO9-AS1 Gene

Variants for IPO9-AS1 Gene

Sequence variations from dbSNP and Humsavar for IPO9-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs879255417 uncertain-significance, not specified 201,785,344(-) GGG/GG intron_variant
rs1000005685 -- 201,810,932(-) C/T intron_variant
rs1000034943 -- 201,719,525(-) A/C intron_variant
rs1000094957 -- 201,827,513(-) A/G intron_variant
rs1000110306 -- 201,735,532(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IPO9-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv136e212 CNV loss 25503493
esv1632559 OTHER inversion 17803354
esv2666987 CNV deletion 23128226
esv2676669 CNV deletion 23128226
esv2721495 CNV deletion 23290073
esv2721506 CNV deletion 23290073
esv3588574 CNV loss 21293372
nsv1012535 CNV loss 25217958
nsv478835 CNV novel sequence insertion 20440878
nsv818766 CNV loss 17921354
nsv826187 CNV loss 20364138

Additional Variant Information for IPO9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IPO9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IPO9-AS1 Gene

Disorders for IPO9-AS1 Gene

Additional Disease Information for IPO9-AS1

No disorders were found for IPO9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IPO9-AS1 Gene

Publications for IPO9-AS1 Gene

No publications were found for IPO9-AS1 Gene.

Products for IPO9-AS1 Gene

Sources for IPO9-AS1 Gene