Aliases for IPO5P1 Gene

Aliases for IPO5P1 Gene

  • Importin 5 Pseudogene 1 2 3 5

External Ids for IPO5P1 Gene

Previous GeneCards Identifiers for IPO5P1 Gene

  • GC19M023441

Summaries for IPO5P1 Gene

GeneCards Summary for IPO5P1 Gene

IPO5P1 (Importin 5 Pseudogene 1) is a Pseudogene.

Additional gene information for IPO5P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IPO5P1 Gene

Genomics for IPO5P1 Gene

GeneHancer (GH) Regulatory Elements for IPO5P1 Gene

Promoters and enhancers for IPO5P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J023272 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 514.8 +0.8 750 3 ZNF217 EP300 POLR2G SP1 ZIC2 POLR2A ZBTB26 TGIF2 NFYB MXI1 IPO5P1 ENSG00000269107 ENSG00000283201 ENSG00000284428 ZNF724
GH19J023276 Promoter 0.3 Ensembl 513.6 -1.0 -1049 0.2 IPO5P1 ENSG00000269107 ENSG00000283201 ENSG00000284428 piR-37170-032
GH19J023249 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 15.9 +24.7 24716 3.1 ZBTB40 ZNF217 SIN3A POLR2G SP1 ZFX POLR2A FOS GABPA SAP30 ZNF724 IPO5P1 ENSG00000269397 BNIP3P38 lnc-ZNF730-8 ENSG00000283201
GH19J023762 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 4 -488.8 -488750 4.8 CTCF NRF1 SP1 TEAD4 ZFX ZBTB5 RFX1 HINFP TAF9B NFYB ENSG00000233836 RPSAP58 lnc-ZNF726-5 ZNF254 ENSG00000268362 LINC01224 IPO5P1
GH19J023253 Enhancer 0.4 Ensembl 15.6 +20.1 20050 2.4 POLR2A SPI1 GATA3 FOXA1 HLF IPO5P1 ENSG00000269397 ZNF724 ENSG00000283201
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IPO5P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IPO5P1 Gene

Genomic Locations for IPO5P1 Gene
chr19:23,255,053-23,274,251
(GRCh38/hg38)
Size:
19,199 bases
Orientation:
Minus strand
chr19:23,437,855-23,457,032
(GRCh37/hg19)
Size:
19,178 bases
Orientation:
Minus strand

Genomic View for IPO5P1 Gene

Genes around IPO5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPO5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPO5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO5P1 Gene

Proteins for IPO5P1 Gene

Post-translational modifications for IPO5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPO5P1 Gene

Domains & Families for IPO5P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IPO5P1 Gene

Function for IPO5P1 Gene

Phenotypes From GWAS Catalog for IPO5P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPO5P1 Gene

Localization for IPO5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IPO5P1 Gene

Pathways & Interactions for IPO5P1 Gene

PathCards logo

SuperPathways for IPO5P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IPO5P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IPO5P1 Gene

Drugs & Compounds for IPO5P1 Gene

No Compound Related Data Available

Transcripts for IPO5P1 Gene

mRNA/cDNA for IPO5P1 Gene

8 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IPO5P1 Gene

No ASD Table

Relevant External Links for IPO5P1 Gene

GeneLoc Exon Structure for
IPO5P1

Expression for IPO5P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IPO5P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IPO5P1

genes like me logo Genes that share expression patterns with IPO5P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IPO5P1 Gene

Orthologs for IPO5P1 Gene

Evolution for IPO5P1 Gene

ENSEMBL:
Gene Tree for IPO5P1 (if available)
TreeFam:
Gene Tree for IPO5P1 (if available)

No data available for Orthologs for IPO5P1 Gene

Paralogs for IPO5P1 Gene

No data available for Paralogs for IPO5P1 Gene

Variants for IPO5P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IPO5P1 Gene

Variant ID Type Subtype PubMed ID
dgv138e55 CNV gain 17911159
dgv514e201 CNV deletion 23290073
esv2751784 CNV gain 17911159
esv2758750 CNV gain+loss 17122850
esv3643989 CNV gain 21293372
esv3643991 CNV gain 21293372
esv5233 OTHER inversion 18987735
nsv1057420 CNV gain 25217958
nsv1131414 CNV deletion 24896259
nsv1138687 CNV deletion 24896259
nsv579033 CNV loss 21841781
nsv579034 CNV gain 21841781
nsv817826 CNV gain 17921354
nsv833789 CNV gain+loss 17160897
nsv833790 CNV gain 17160897
nsv9686 CNV gain+loss 18304495

Additional Variant Information for IPO5P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IPO5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for IPO5P1 Gene

Disorders for IPO5P1 Gene

Additional Disease Information for IPO5P1

No disorders were found for IPO5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IPO5P1 Gene

Publications for IPO5P1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for IPO5P1 Gene

Sources for IPO5P1 Gene