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Aliases for IPO11-LRRC70 Gene

Subcategory (RNA class) for IPO11-LRRC70 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for IPO11-LRRC70 Gene

  • IPO11-LRRC70 Readthrough 3

External Ids for IPO11-LRRC70 Gene

Previous GeneCards Identifiers for IPO11-LRRC70 Gene

  • GC05U901646

Summaries for IPO11-LRRC70 Gene

Entrez Gene Summary for IPO11-LRRC70 Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring IPO11 (importin 11) and LRRC70 (leucine rich repeat containing 70) genes on chromosome 5. The readthrough transcript is represented as non-coding because it lacks a supported open reading frame. [provided by RefSeq, Jan 2013]

GeneCards Summary for IPO11-LRRC70 Gene

IPO11-LRRC70 (IPO11-LRRC70 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for IPO11-LRRC70 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IPO11-LRRC70 Gene

Genomics for IPO11-LRRC70 Gene

GeneHancer (GH) Regulatory Elements for IPO11-LRRC70 Gene

Promoters and enhancers for IPO11-LRRC70 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I062576 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.3 319 4.5 RFX1 JUN ETV1 ARID4B ZNF384 ELF1 BMI1 NR2F2 GABPA RFX3 IPO11-LRRC70 LRRC70 RPL35AP14 IPO11 PIR51933
GH05I062584 Enhancer 0.9 ENCODE dbSUPER 0.4 +6.9 6864 1.5 SMARCE1 HDAC1 TEAD4 JUN DPF2 ELF1 ZEB2 EP300 ZNF592 FOSL1 DIMT1 IPO11-LRRC70 LRRC70 IPO11 PIR51933
GH05I062598 Enhancer 0.7 dbSUPER 0.3 +22.2 22157 4.4 SOX13 TFAP4 FOXA2 ZNF644 THRB RARA GATA3 NR2F6 FOS HOMEZ DIMT1 RPL35AP14 IPO11-LRRC70 LRRC70 PIR51933 IPO11
GH05I062620 Enhancer 0.7 ENCODE dbSUPER 0.3 +42.6 42558 0.6 EGR1 SCRT2 ZEB2 PRDM10 IPO11-LRRC70 LRRC70 PIR51933 IPO11
GH05I062592 Enhancer 0.5 ENCODE 0.4 +14.0 14014 0.2 CC2D1A AFF1 ZBTB33 CHAMP1 IPO11-LRRC70 LRRC70 PIR51933 IPO11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IPO11-LRRC70 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IPO11-LRRC70 Gene

Genomic Locations for IPO11-LRRC70 Gene
chr5:62,578,735-62,628,589
(GRCh38/hg38)
Size:
49,855 bases
Orientation:
Plus strand

Genomic View for IPO11-LRRC70 Gene

Genes around IPO11-LRRC70 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IPO11-LRRC70 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IPO11-LRRC70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IPO11-LRRC70 Gene

Proteins for IPO11-LRRC70 Gene

Post-translational modifications for IPO11-LRRC70 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IPO11-LRRC70 Gene

Domains & Families for IPO11-LRRC70 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IPO11-LRRC70 Gene

Function for IPO11-LRRC70 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IPO11-LRRC70 Gene

Localization for IPO11-LRRC70 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IPO11-LRRC70 Gene

Pathways & Interactions for IPO11-LRRC70 Gene

SuperPathways for IPO11-LRRC70 Gene

No Data Available

Interacting Proteins for IPO11-LRRC70 Gene

Gene Ontology (GO) - Biological Process for IPO11-LRRC70 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IPO11-LRRC70 Gene

Drugs & Compounds for IPO11-LRRC70 Gene

No Compound Related Data Available

Transcripts for IPO11-LRRC70 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for IPO11-LRRC70 Gene

No ASD Table

Relevant External Links for IPO11-LRRC70 Gene

GeneLoc Exon Structure for
IPO11-LRRC70

No data available for mRNA/cDNA for IPO11-LRRC70 Gene

Expression for IPO11-LRRC70 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IPO11-LRRC70 Gene

Orthologs for IPO11-LRRC70 Gene

No data available for Orthologs and Evolution for IPO11-LRRC70 Gene

Paralogs for IPO11-LRRC70 Gene

No data available for Paralogs for IPO11-LRRC70 Gene

Variants for IPO11-LRRC70 Gene

Sequence variations from dbSNP and Humsavar for IPO11-LRRC70 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000008643 -- 62,615,737(+) G/A/C intron_variant
rs1000054572 -- 62,611,635(+) A/G intron_variant
rs1000089674 -- 62,600,040(+) T/C intron_variant
rs1000107721 -- 62,606,893(+) C/T intron_variant
rs1000112908 -- 62,590,814(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IPO11-LRRC70 Gene

Variant ID Type Subtype PubMed ID
dgv5689n100 CNV gain 25217958
dgv5690n100 CNV gain 25217958
dgv941e201 CNV deletion 23290073
dgv942e201 CNV deletion 23290073
esv2005948 CNV deletion 18987734
esv2591326 CNV deletion 19546169
esv2763458 CNV gain 21179565
esv3575853 CNV gain 25503493
esv3605243 CNV loss 21293372
nsv1074301 CNV deletion 25765185
nsv328501 CNV deletion 16902084
nsv4858 CNV deletion 18451855
nsv598348 CNV gain 21841781
nsv955846 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for IPO11-LRRC70 Gene

Disorders for IPO11-LRRC70 Gene

Additional Disease Information for IPO11-LRRC70

No disorders were found for IPO11-LRRC70 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IPO11-LRRC70 Gene

Publications for IPO11-LRRC70 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for IPO11-LRRC70 Gene

Sources for IPO11-LRRC70 Gene

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