Aliases for INTS6P1 Gene

Aliases for INTS6P1 Gene

  • Integrator Complex Subunit 6 Pseudogene 1 2 3 5

External Ids for INTS6P1 Gene

Summaries for INTS6P1 Gene

GeneCards Summary for INTS6P1 Gene

INTS6P1 (Integrator Complex Subunit 6 Pseudogene 1) is a Pseudogene.

Additional gene information for INTS6P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for INTS6P1 Gene

Genomics for INTS6P1 Gene

GeneHancer (GH) Regulatory Elements for INTS6P1 Gene

Promoters and enhancers for INTS6P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J039721 Enhancer 0.2 FANTOM5 500.7 +0.2 195 0.2 INTS6P1 piR-35002-015
GH05J039716 Enhancer 1 Ensembl ENCODE 0.7 +4.7 4743 0.9 ZNF217 CTCF TCF12 FOXA1 REST CUX1 ZBTB25 EP300 SKI TEAD1 INTS6P1 piR-35002-015
GH05J039711 Enhancer 0.9 Ensembl ENCODE 0.4 +8.1 8095 2.9 CTCF TCF12 FOXA1 REST RAD21 EP300 ATF2 TBX3 SMC3 CREB1 INTS6P1 piR-35002-015
GH05J039717 Enhancer 0.4 Ensembl 0.7 +3.8 3812 0.6 FOS CEBPB EZH2 EP300 INTS6P1 piR-35002-015
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around INTS6P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for INTS6P1 Gene

Genomic Locations for INTS6P1 Gene
chr5:39,718,984-39,721,513
(GRCh38/hg38)
Size:
2,530 bases
Orientation:
Minus strand
chr5:39,719,086-39,721,615
(GRCh37/hg19)
Size:
2,530 bases
Orientation:
Minus strand

Genomic View for INTS6P1 Gene

Genes around INTS6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6P1 Gene

Proteins for INTS6P1 Gene

Post-translational modifications for INTS6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6P1 Gene

Domains & Families for INTS6P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for INTS6P1 Gene

Function for INTS6P1 Gene

Phenotypes From GWAS Catalog for INTS6P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6P1 Gene

Localization for INTS6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for INTS6P1 Gene

Pathways & Interactions for INTS6P1 Gene

PathCards logo

SuperPathways for INTS6P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for INTS6P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for INTS6P1 Gene

Drugs & Compounds for INTS6P1 Gene

No Compound Related Data Available

Transcripts for INTS6P1 Gene

mRNA/cDNA for INTS6P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6P1 Gene

No ASD Table

Relevant External Links for INTS6P1 Gene

GeneLoc Exon Structure for
INTS6P1

Expression for INTS6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for INTS6P1 Gene

genes like me logo Genes that share expression patterns with INTS6P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INTS6P1 Gene

Orthologs for INTS6P1 Gene

Evolution for INTS6P1 Gene

ENSEMBL:
Gene Tree for INTS6P1 (if available)
TreeFam:
Gene Tree for INTS6P1 (if available)

No data available for Orthologs for INTS6P1 Gene

Paralogs for INTS6P1 Gene

No data available for Paralogs for INTS6P1 Gene

Variants for INTS6P1 Gene

Additional Variant Information for INTS6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for INTS6P1 Gene

Disorders for INTS6P1 Gene

Additional Disease Information for INTS6P1

No disorders were found for INTS6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6P1 Gene

Publications for INTS6P1 Gene

  1. Pseudogene integrator complex subunit 6 pseudogene 1 (INTS6P1) as a novel plasma-based biomarker for hepatocellular carcinoma screening. (PMID: 26286832) Lui KY … Lu MQ (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016) 3 54
  2. Pseudogene INTS6P1 regulates its cognate gene INTS6 through competitive binding of miR-17-5p in hepatocellular carcinoma. (PMID: 25686840) Peng H … Selaru FM (Oncotarget 2015) 3 54
  3. Promoter CpG hypermethylation and downregulation of DICE1 expression in prostate cancer. (PMID: 16007164) Röpke A … Wieacker PF (Oncogene 2005) 3 54

Products for INTS6P1 Gene

Sources for INTS6P1 Gene