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Aliases for INTS6-AS1 Gene

Subcategory (RNA class) for INTS6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for INTS6-AS1 Gene

  • INTS6 Antisense RNA 1 2 3 5
  • INTS6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for INTS6-AS1 Gene

Previous GeneCards Identifiers for INTS6-AS1 Gene

  • GC13P052029

Summaries for INTS6-AS1 Gene

GeneCards Summary for INTS6-AS1 Gene

INTS6-AS1 (INTS6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for INTS6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for INTS6-AS1 Gene

Genomics for INTS6-AS1 Gene

GeneHancer (GH) Regulatory Elements for INTS6-AS1 Gene

Promoters and enhancers for INTS6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I051450 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.7 691 5.6 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 RPS4XP16 INTS6 INTS6-AS1 MRPS31P5 SERPINE3 DHRS12 ENSG00000231856 UTP14C ALG11
GH13I052193 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 21.1 +742.3 742293 2.7 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MRPS31P5 ALG11 RPS4XP16 UTP14C SUGT1 CKAP2 INTS6 SERPINE3 INTS6-AS1 TPTE2P2
GH13I051478 Enhancer 0.8 ENCODE 0.3 +26.7 26717 1.1 ELF3 SOX13 PKNOX1 FOXA2 JUN BATF ZNF7 TEAD3 FOSL2 ETV6 ENSG00000231856 DHRS12 RN7SL320P SNRPGP11 INTS6-AS1
GH13I051522 Enhancer 1.2 Ensembl ENCODE 0.2 +72.2 72184 3.7 PKNOX1 ATF1 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 GTF3C2 SLC30A9 UTP14C WDFY2 SNRPGP11 MIR4703 INTS6-AS1
GH13I051549 Enhancer 1.1 Ensembl ENCODE 0.2 +97.0 97026 0.4 HDAC1 ELF3 BATF IRF4 THRB RARA GLIS2 EGR1 ETV6 FOS WDFY2 MIR4703 SNRPGP11 INTS6-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for INTS6-AS1 Gene

Genomic Locations for INTS6-AS1 Gene
chr13:51,452,367-51,552,364
(GRCh38/hg38)
Size:
99,998 bases
Orientation:
Plus strand
chr13:52,026,503-52,126,500
(GRCh37/hg19)

Genomic View for INTS6-AS1 Gene

Genes around INTS6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INTS6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INTS6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INTS6-AS1 Gene

Proteins for INTS6-AS1 Gene

Post-translational modifications for INTS6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INTS6-AS1 Gene

Domains & Families for INTS6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for INTS6-AS1 Gene

Function for INTS6-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INTS6-AS1 Gene

Localization for INTS6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for INTS6-AS1 Gene

Pathways & Interactions for INTS6-AS1 Gene

SuperPathways for INTS6-AS1 Gene

No Data Available

Interacting Proteins for INTS6-AS1 Gene

Gene Ontology (GO) - Biological Process for INTS6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for INTS6-AS1 Gene

Drugs & Compounds for INTS6-AS1 Gene

No Compound Related Data Available

Transcripts for INTS6-AS1 Gene

mRNA/cDNA for INTS6-AS1 Gene

(5) Additional mRNA sequences :
(30) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for INTS6-AS1 Gene

INTS6 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for INTS6-AS1 Gene

No ASD Table

Relevant External Links for INTS6-AS1 Gene

GeneLoc Exon Structure for
INTS6-AS1
ECgene alternative splicing isoforms for
INTS6-AS1

Expression for INTS6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for INTS6-AS1 Gene

SOURCE GeneReport for Unigene cluster for INTS6-AS1 Gene:

Hs.594897
genes like me logo Genes that share expression patterns with INTS6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INTS6-AS1 Gene

Orthologs for INTS6-AS1 Gene

Evolution for INTS6-AS1 Gene

ENSEMBL:
Gene Tree for INTS6-AS1 (if available)
TreeFam:
Gene Tree for INTS6-AS1 (if available)

No data available for Orthologs for INTS6-AS1 Gene

Paralogs for INTS6-AS1 Gene

No data available for Paralogs for INTS6-AS1 Gene

Variants for INTS6-AS1 Gene

Sequence variations from dbSNP and Humsavar for INTS6-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000879874 -- 51,453,011(+) T/C upstream_transcript_variant
rs1000943704 -- 51,453,158(+) C/T upstream_transcript_variant
rs1001083328 -- 51,453,310(+) A/G upstream_transcript_variant
rs1001443776 -- 51,452,536(+) G/A upstream_transcript_variant
rs1001780485 -- 51,451,531(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for INTS6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3892343 CNV gain 25118596
nsv1069754 CNV deletion 25765185
nsv561618 CNV loss 21841781

Additional Variant Information for INTS6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INTS6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for INTS6-AS1 Gene

Disorders for INTS6-AS1 Gene

Additional Disease Information for INTS6-AS1

No disorders were found for INTS6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INTS6-AS1 Gene

Publications for INTS6-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for INTS6-AS1 Gene

Sources for INTS6-AS1 Gene

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