Aliases for INO80D Gene

Aliases for INO80D Gene

  • INO80 Complex Subunit D 2 3 4 5
  • FLJ20309 2
  • INO80D 5

External Ids for INO80D Gene

Previous GeneCards Identifiers for INO80D Gene

  • GC02M206566
  • GC02M206858
  • GC02M198706

Summaries for INO80D Gene

GeneCards Summary for INO80D Gene

INO80D (INO80 Complex Subunit D) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and Regulation of activated PAK-2p34 by proteasome mediated degradation.

UniProtKB/Swiss-Prot Summary for INO80D Gene

  • Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Additional gene information for INO80D Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for INO80D Gene

Genomics for INO80D Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for INO80D Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around INO80D on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for INO80D

Top Transcription factor binding sites by QIAGEN in the INO80D gene promoter:
  • AML1a
  • ARP-1
  • Cdc5
  • COMP1
  • Egr-4
  • NF-kappaB
  • NF-kappaB1
  • NF-kappaB2
  • Pax-5

Genomic Locations for INO80D Gene

Genomic Locations for INO80D Gene
chr2:205,993,721-206,086,303
(GRCh38/hg38)
Size:
92,583 bases
Orientation:
Minus strand
chr2:206,858,445-206,951,027
(GRCh37/hg19)
Size:
92,583 bases
Orientation:
Minus strand

Genomic View for INO80D Gene

Genes around INO80D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
INO80D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INO80D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INO80D Gene

Proteins for INO80D Gene

  • Protein details for INO80D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53TQ3-IN80D_HUMAN
    Recommended name:
    INO80 complex subunit D
    Protein Accession:
    Q53TQ3
    Secondary Accessions:
    • B3KU68
    • B9EG77
    • Q6PJC6
    • Q6PJU1
    • Q6PKA1
    • Q9NXD5

    Protein attributes for INO80D Gene

    Size:
    1027 amino acids
    Molecular mass:
    113202 Da
    Quaternary structure:
    • Component of the chromatin remodeling INO80 complex; specifically part of a complex module associated with the N-terminus of INO80.
    SequenceCaution:
    • Sequence=AAH04193.2; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH11687.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; Sequence=AAH11687.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH17290.2; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAX93069.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAA91079.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; Sequence=BAA91079.1; Type=Frameshift; Evidence={ECO:0000305}; Sequence=BAA91079.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=EAW70375.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for INO80D Gene

Post-translational modifications for INO80D Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for INO80D Gene

Domains & Families for INO80D Gene

Gene Families for INO80D Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for INO80D Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for INO80D Gene

GenScript: Design optimal peptide antigens:
  • INO80 complex subunit D (IN80D_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q53TQ3

UniProtKB/Swiss-Prot:

IN80D_HUMAN :
  • Belongs to the INO80D family.
Family:
  • Belongs to the INO80D family.
genes like me logo Genes that share domains with INO80D: view

Function for INO80D Gene

Molecular function for INO80D Gene

UniProtKB/Swiss-Prot Function:
Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Phenotypes From GWAS Catalog for INO80D Gene

genes like me logo Genes that share phenotypes with INO80D: view

Animal Models for INO80D Gene

MGI Knock Outs for INO80D:
  • Ino80d Ino80d<tm1b(EUCOMM)Wtsi>

Animal Model Products

CRISPR Products

miRNA for INO80D Gene

miRTarBase miRNAs that target INO80D

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for INO80D

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for INO80D Gene

Localization for INO80D Gene

Subcellular locations from UniProtKB/Swiss-Prot for INO80D Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for INO80D gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for INO80D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA 21873635
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with INO80D: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for INO80D Gene

Pathways & Interactions for INO80D Gene

genes like me logo Genes that share pathways with INO80D: view

Pathways by source for INO80D Gene

Gene Ontology (GO) - Biological Process for INO80D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006281 DNA repair IEA --
GO:0006310 DNA recombination IEA --
GO:0006974 cellular response to DNA damage stimulus IEA --
GO:0016579 protein deubiquitination TAS --
genes like me logo Genes that share ontologies with INO80D: view

No data available for SIGNOR curated interactions for INO80D Gene

Drugs & Compounds for INO80D Gene

No Compound Related Data Available

Transcripts for INO80D Gene

mRNA/cDNA for INO80D Gene

1 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for INO80D

Alternative Splicing Database (ASD) splice patterns (SP) for INO80D Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1:
SP2:
SP3: -

Relevant External Links for INO80D Gene

GeneLoc Exon Structure for
INO80D

Expression for INO80D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for INO80D Gene

Protein differential expression in normal tissues from HIPED for INO80D Gene

This gene is overexpressed in Heart (21.4), Pancreas (16.1), Urinary Bladder (14.2), and Adrenal (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for INO80D Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for INO80D

SOURCE GeneReport for Unigene cluster for INO80D Gene:

Hs.445036

Evidence on tissue expression from TISSUES for INO80D Gene

  • Nervous system(4.4)
  • Muscle(4.3)
genes like me logo Genes that share expression patterns with INO80D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for INO80D Gene

Orthologs for INO80D Gene

This gene was present in the common ancestor of animals.

Orthologs for INO80D Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia INO80D 30 31
  • 99.77 (n)
OneToOne
Dog
(Canis familiaris)
Mammalia INO80D 30 31
  • 95.39 (n)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia INO80D 31
  • 93 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia INO80D 30 31
  • 92.91 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Ino80d 30
  • 91.48 (n)
Platypus
(Ornithorhynchus anatinus)
Mammalia INO80D 31
  • 91 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Ino80d 30 17 31
  • 90.7 (n)
OneToOne
Chicken
(Gallus gallus)
Aves INO80D 30 31
  • 87.75 (n)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia INO80D 31
  • 87 (a)
OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia ino80d 30
  • 74.31 (n)
Zebrafish
(Danio rerio)
Actinopterygii LOC555228 30
  • 61.31 (n)
ino80da 31
  • 57 (a)
OneToMany
ino80db 31
  • 49 (a)
OneToMany
Dr.13218 30
Fruit Fly
(Drosophila melanogaster)
Insecta dgt1 31
  • 13 (a)
OneToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea -- 31
  • 15 (a)
OneToMany
Species where no ortholog for INO80D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for INO80D Gene

ENSEMBL:
Gene Tree for INO80D (if available)
TreeFam:
Gene Tree for INO80D (if available)
Aminode:
Evolutionary constrained regions (ECRs) for INO80D: view image

Paralogs for INO80D Gene

No data available for Paralogs for INO80D Gene

Variants for INO80D Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for INO80D Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
771130 Benign: not provided 206,009,583(-) T/C MISSENSE_VARIANT
773432 Benign: not provided 206,056,266(-) C/T MISSENSE_VARIANT
rs2909111 - p.Ala358Val

Additional dbSNP identifiers (rs#s) for INO80D Gene

Structural Variations from Database of Genomic Variants (DGV) for INO80D Gene

Variant ID Type Subtype PubMed ID
esv2665558 CNV deletion 23128226
esv3594060 CNV loss 21293372
nsv1073008 CNV deletion 25765185
nsv508196 CNV deletion 20534489

Variation tolerance for INO80D Gene

Residual Variation Intolerance Score: 11.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.79; 91.66% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for INO80D Gene

Human Gene Mutation Database (HGMD)
INO80D
SNPedia medical, phenotypic, and genealogical associations of SNPs for
INO80D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for INO80D Gene

Disorders for INO80D Gene

Additional Disease Information for INO80D

No disorders were found for INO80D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INO80D Gene

Publications for INO80D Gene

  1. A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex. (PMID: 16230350) Jin J … Conaway JW (The Journal of biological chemistry 2005) 2 3 4
  2. Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling. (PMID: 21303910) Chen L … Conaway RC (The Journal of biological chemistry 2011) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  4. H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination to sister chromatids. (PMID: 30804502) Nakamura K … Groth A (Nature cell biology 2019) 3
  5. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3

Products for INO80D Gene

Sources for INO80D Gene