Aliases for INO80-AS1 Gene

Data sources for INO80-AS1 Gene:

RNA type for INO80-AS1 Gene

lncRNA

Aliases for INO80-AS1 Gene

External Ids for INO80-AS1 Gene

Summaries for INO80-AS1 Gene

GeneCards Summary for INO80-AS1 Gene

INO80-AS1 (INO80 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for INO80-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for INO80-AS1 Gene

Genomics for INO80-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for INO80-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J041016 Enhancer 0.9 Ensembl ENCODE 250.7 +1.9 1857 4.9 SSRP1 CTCF ZNF217 CTBP1 SMAD4 RAD21 SMC3 TEAD3 RBM22 SIN3A AB372645 ENSG00000280036 INO80-AS1 NDUFAF1 ENSG00000251161 VPS18 DLL4 CHAC1 SPINT1 CHP1
GH15J041009 Enhancer 0.8 Ensembl ENCODE 0.7 -4.0 -4048 5.6 CEBPB SPI1 BATF IKZF1 NR2F1 ZNF687 IKZF2 MTA2 RUNX3 RELB ENSG00000259463 NDUFAF1 ENSG00000251161 VPS18 CHAC1 DLL4 RHOV SPINT1 CHP1 EXD1
GH15J041023 Enhancer 0.6 Ensembl ENCODE 0.4 +7.9 7905 2.1 JUND GLIS1 EP300 NR2F2 ENSG00000251161 VPS18 DLL4 CHAC1 NDUFAF1 SPINT1 RNU6-1169P INO80 piR-54513 INO80-AS1
GH15J041022 Enhancer 0.5 ENCODE 0.4 +5.9 5878 0.2 ZNF654 DEK TRIM22 CTCF RAD21 SMC3 RBM22 ZNF143 CHD2 piR-54513 ENSG00000251161 VPS18 DLL4 CHAC1 SPINT1 INO80-AS1 lnc-RHOV-1 INO80
GH15J041031 Enhancer 0.4 Ensembl 0.4 +15.2 15169 0.5 ZNF768 BRD9 SMARCA5 WT1 HSALNG0105329 lnc-RHOV-1 ENSG00000260814 INO80-AS1 CHAC1 INO80
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around INO80-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for INO80-AS1 Gene

Latest Assembly
chr15:41,016,800-41,035,767
(GRCh38/hg38)
Size:
18,968 bases
Orientation:
Plus strand

Previous Assembly
chr15:41,308,998-41,320,089
(GRCh37/hg19 by Entrez Gene)
Size:
11,092 bases
Orientation:
Plus strand

chr15:41,309,005-41,320,091
(GRCh37/hg19 by Ensembl)
Size:
11,087 bases
Orientation:
Plus strand

Genomic View for INO80-AS1 Gene

Genes around INO80-AS1 on UCSC Golden Path with GeneCards custom track
INO80-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
INO80-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for INO80-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for INO80-AS1 Gene

Proteins for INO80-AS1 Gene

Post-translational modifications for INO80-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for INO80-AS1 Gene

Domains & Families for INO80-AS1 Gene

Gene Families for INO80-AS1 Gene

genes like me logo Genes that share domains with INO80-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for INO80-AS1 Gene

Function for INO80-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for INO80-AS1 Gene

Localization for INO80-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for INO80-AS1 Gene

Pathways & Interactions for INO80-AS1 Gene

PathCards logo

SuperPathways for INO80-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for INO80-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for INO80-AS1 Gene

Drugs & Compounds for INO80-AS1 Gene

No Compound Related Data Available

Transcripts for INO80-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for INO80-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004ED498_9606 lncRNA 312 4

Ensembl: ENST00000558967 (view in UCSC) ,

LncBook: HSALNT0219155,

LNCipedia: INO80-AS1:3,

NONCODE: NONHSAT041908.2,

URS0000377D68_9606 lncRNA 444 3

Ensembl: ENST00000560178 (view in UCSC) ,

LncBook: HSALNT0219158,

NONCODE: NONHSAT041910.2,

URS000212318E_9606 lncRNA 717 1

RefSeq: NR_170322,

URS0001BE36BC_9606 lncRNA 1790 1

LncBook: HSALNT0219157,

URS0000EADD00_9606 lncRNA 446 1

LncBook: HSALNT0289012,

INO80-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for INO80-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for INO80-AS1 Gene

No ASD Table

Relevant External Links for INO80-AS1 Gene

GeneLoc Exon Structure for
INO80-AS1

Expression for INO80-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for INO80-AS1 Gene

Orthologs for INO80-AS1 Gene

Evolution for INO80-AS1 Gene

ENSEMBL:
Gene Tree for INO80-AS1 (if available)
TreeFam:
Gene Tree for INO80-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for INO80-AS1

No data available for Orthologs for INO80-AS1 Gene

Paralogs for INO80-AS1 Gene

No data available for Paralogs for INO80-AS1 Gene

Variants for INO80-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for INO80-AS1 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs149600837 Uncertain Significance: none provided 41,027,646(+) G/A
NM_017553.3(INO80):c.2998C>T (p.Arg1000Cys)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

Additional Variant Information for INO80-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
INO80-AS1
Leiden Open Variation Database (LOVD)
INO80-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for INO80-AS1 Gene

Disorders for INO80-AS1 Gene

Additional Disease Information for INO80-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for INO80-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for INO80-AS1 Gene

Publications for INO80-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3

No data available for Mastermind for INO80-AS1 Gene

Products for INO80-AS1 Gene

Sources for INO80-AS1 Gene