ILF3-DT Gene (RNA Gene)

ILF3 Divergent Transcript

GC19M010652
GIFtS:
13
See more...

Aliases for ILF3-DT Gene

Subcategory (RNA class) for ILF3-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ILF3-DT Gene

  • ILF3 Divergent Transcript 2 3 5
  • ILF3-DT 2 5 165
  • ILF3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ILF3 Antisense RNA 1 (Head To Head) 2 3
  • ILF3 Divergent Tranacript 3
  • ILF3 Antisense RNA 1 2
  • NONHSAG024799.2 91
  • HSALNG0123950 164
  • CTC-539A10.4 3
  • ILF3-AS1 3

External Ids for ILF3-DT Gene

Previous HGNC Symbols for ILF3-DT Gene

  • ILF3-AS1

Previous GeneCards Identifiers for ILF3-DT Gene

  • GC19M010656
  • GC19M010660

Summaries for ILF3-DT Gene

GeneCards Summary for ILF3-DT Gene

ILF3-DT (ILF3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ILF3-DT include Cervical Squamous Cell Carcinoma and Melanoma.

Additional gene information for ILF3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ILF3-DT Gene

Genomics for ILF3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ILF3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J010651 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 624.9 -0.5 -457 5.7 ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 REST ILF3 ILF3-DT piR-46435 piR-61384 ZNF627 LOC100419831 FBXL12 ZNF562 KRI1 DNMT1
GH19J010717 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 19 -64.8 -64803 4.3 SP1 CREB1 GATAD2A CTCF PRDM10 REST ZNF512 RFX1 SIX5 LEF1 DNM2 MIR638 EIF3G ILF3 KRI1 FBXL12 RAVER1 UBE2L4 QTRT1 ZNF627
GH19J010110 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 27.9 +541.0 541043 5.2 SP1 HNRNPL CTCF ZBTB33 PRDM10 ZNF692 POLR2A BACH1 STAT3 ZNF143 P2RY11 piR-54092 ILF3 ZNF699 ZNF266 ZNF559 ZNF317 DNMT1 LOC100419831 PPAN
GH19J010834 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 18.4 -182.0 -182038 2.6 RNF2 SP1 HNRNPL CREB1 TEAD4 PRDM10 REST ZNF629 TFE3 ZNF512 C19orf38 TMED1 KRI1 DNMT1 ILF3 ZNF491 ZNF627 ZNF441 RAVER1 ILF3-DT
GH19J010415 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 19.4 +233.2 233155 10.6 ZNF221 BRCA1 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PDE4A CDC37 ILF3 ZNF266 KRI1 LOC100419831 DNMT1 RAVER1 FBXL12 PPAN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ILF3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ILF3-DT Gene

Genomic Locations for ILF3-DT Gene
chr19:10,651,248-10,654,071
(GRCh38/hg38)
Size:
2,824 bases
Orientation:
Minus strand
chr19:10,762,538-10,764,548
(GRCh37/hg19)
Size:
2,011 bases
Orientation:
Minus strand

Genomic View for ILF3-DT Gene

Genes around ILF3-DT on UCSC Golden Path with GeneCards custom track
ILF3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ILF3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ILF3-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ILF3-DT Gene

Proteins for ILF3-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ILF3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ILF3-DT Gene

Domains & Families for ILF3-DT Gene

Gene Families for ILF3-DT Gene

HGNC:
genes like me logo Genes that share domains with ILF3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ILF3-DT Gene

Function for ILF3-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ILF3-DT Gene

Phenotypes for ILF3-DT Gene

GenomeRNAi human phenotypes for ILF3-DT:
genes like me logo Genes that share phenotypes with ILF3-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ILF3-DT Gene

Localization for ILF3-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ILF3-DT gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ILF3-DT Gene

Pathways & Interactions for ILF3-DT Gene

PathCards logo

SuperPathways for ILF3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ILF3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ILF3-DT Gene

Drugs & Compounds for ILF3-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ILF3-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ILF3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B993_9606 lncRNA 2011 2

HGNC: 27115,

RefSeq: NR_024333,

URS0000446FF2_9606 lncRNA 1983 2

Ensembl: ENST00000591501 (view in UCSC) ,

LNCipedia: ILF3-DT:19,

URS00008B5506_9606 lncRNA 1895 3

LncBook: HSALNT0255711,

LNCipedia: ILF3-DT:15,

NONCODE: NONHSAT061081.2,

URS00008B61F6_9606 lncRNA 1849 3

LncBook: HSALNT0255704,

LNCipedia: ILF3-DT:16,

NONCODE: NONHSAT061079.2,

URS00008BC2FD_9606 lncRNA 1551 3

LncBook: HSALNT0255713,

LNCipedia: ILF3-DT:17,

NONCODE: NONHSAT061082.2,

ILF3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ILF3-DT Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ILF3-DT Gene

No ASD Table

Relevant External Links for ILF3-DT Gene

GeneLoc Exon Structure for
ILF3-DT

Expression for ILF3-DT Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ILF3-DT

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ILF3-DT Gene

Orthologs for ILF3-DT Gene

Evolution for ILF3-DT Gene

ENSEMBL:
Gene Tree for ILF3-DT (if available)
TreeFam:
Gene Tree for ILF3-DT (if available)

No data available for Orthologs for ILF3-DT Gene

Paralogs for ILF3-DT Gene

No data available for Paralogs for ILF3-DT Gene

Variants for ILF3-DT Gene

Additional dbSNP identifiers (rs#s) for ILF3-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for ILF3-DT Gene

Variant ID Type Subtype PubMed ID
nsv1160584 CNV deletion 26073780
nsv833745 CNV loss 17160897

Additional Variant Information for ILF3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ILF3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ILF3-DT Gene

Disorders for ILF3-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for ILF3-DT Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ILF3-DT

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with ILF3-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ILF3-DT Gene

Publications for ILF3-DT Gene

  1. Long noncoding RNA ILF3-AS1 promotes cell proliferation, migration, and invasion via negatively regulating miR-200b/a/429 in melanoma. (PMID: 28935763) Chen X … Sun W (Bioscience reports 2017) 2 3
  2. SP1-mediated upregulation of lncRNA ILF3-AS1 functions a ceRNA for miR-212 to contribute to osteosarcoma progression via modulation of SOX5. (PMID: 30819403) Hu XH … Hao YD (Biochemical and biophysical research communications 2019) 3
  3. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M … Qi L (Human molecular genetics 2015) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for ILF3-DT gene in Mastermind

Products for ILF3-DT Gene

Sources for ILF3-DT Gene