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Aliases for ILF3-DT Gene

Subcategory (RNA class) for ILF3-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ILF3-DT Gene

  • ILF3 Divergent Transcript 2 3 5
  • ILF3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ILF3 Antisense RNA 1 (Head To Head) 2 3
  • ILF3 Divergent Tranacript 3
  • ILF3 Antisense RNA 1 2
  • CTC-539A10.4 3
  • ILF3-AS1 3

External Ids for ILF3-DT Gene

Previous HGNC Symbols for ILF3-DT Gene

  • ILF3-AS1

Previous GeneCards Identifiers for ILF3-DT Gene

  • GC19M010656
  • GC19M010652

Summaries for ILF3-DT Gene

GeneCards Summary for ILF3-DT Gene

ILF3-DT (ILF3 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with ILF3-DT include Cervical Squamous Cell Carcinoma and Melanoma.

Additional gene information for ILF3-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ILF3-DT Gene

Genomics for ILF3-DT Gene

GeneHancer (GH) Regulatory Elements for ILF3-DT Gene

Promoters and enhancers for ILF3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010651 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 624.9 -0.5 -456 5.3 MTA3 ZFX SP1 ELF3 MNT SIX5 CBFA2T2 ZNF148 NKRF POLR2A ILF3 ILF3-DT PIR39434 PIR56383 GC19M010665 ZNF627 LOC100419831 KRI1 FBXL12 DNMT1
GH19J010110 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 27.9 +540.8 540844 5.2 SP1 CTCF POLR2A ZNF687 ZSCAN21 ZBTB7A KLF14 CREM EGR1 RAD21 P2RY11 GC19P010140 PIR48091 ILF3 ZNF699 ZNF266 ZNF559 ZNF317 DNMT1 LOC100419831
GH19J010717 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19 -65.1 -65140 4 MTA3 ZFX SP1 CC2D1A CTCF ELF3 SIX5 CBFA2T2 NKRF POLR2A DNM2 GC19P010719 GC19P010718 MIR638 KRI1 ILF3 EIF3G PPAN FBXL12 TIMM29
GH19J010834 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.4 -182.5 -182536 3.2 ZNF473 MTA3 SP1 CC2D1A ZFX CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 TMED1 C19orf38 ILF3 KRI1 RAVER1 ZNF627 ZNF491 ZNF441 DNMT1 PRKCSH
GH19J010699 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16.2 -47.4 -47429 3 ZNF652 SP1 CTCF ELF3 MNT SIX5 CBFA2T2 NKRF POLR2A RERE QTRT1 ZNF627 ILF3 LOC100419831 FBXL12 KRI1 DNMT1 ENSG00000213304 ILF3-DT SMARCA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ILF3-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for ILF3-DT Gene

Genomic Locations for ILF3-DT Gene
chr19:10,651,862-10,653,872
(GRCh38/hg38)
Size:
2,011 bases
Orientation:
Minus strand
chr19:10,762,538-10,764,548
(GRCh37/hg19)
Size:
2,011 bases
Orientation:
Minus strand

Genomic View for ILF3-DT Gene

Genes around ILF3-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ILF3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ILF3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ILF3-DT Gene

Proteins for ILF3-DT Gene

Post-translational modifications for ILF3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ILF3-DT Gene

Domains & Families for ILF3-DT Gene

Gene Families for ILF3-DT Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ILF3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ILF3-DT Gene

Function for ILF3-DT Gene

Phenotypes From GWAS Catalog for ILF3-DT Gene

Phenotypes for ILF3-DT Gene

genes like me logo Genes that share phenotypes with ILF3-DT: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ILF3-DT Gene

Localization for ILF3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ILF3-DT Gene

Pathways & Interactions for ILF3-DT Gene

PathCards logo

SuperPathways for ILF3-DT Gene

No Data Available

Interacting Proteins for ILF3-DT Gene

Gene Ontology (GO) - Biological Process for ILF3-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ILF3-DT Gene

Drugs & Compounds for ILF3-DT Gene

No Compound Related Data Available

Transcripts for ILF3-DT Gene

mRNA/cDNA for ILF3-DT Gene

(8) Additional mRNA sequences :
(87) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ILF3-DT Gene

No ASD Table

Relevant External Links for ILF3-DT Gene

GeneLoc Exon Structure for
ILF3-DT
ECgene alternative splicing isoforms for
ILF3-DT

Expression for ILF3-DT Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ILF3-DT Gene

Orthologs for ILF3-DT Gene

Evolution for ILF3-DT Gene

ENSEMBL:
Gene Tree for ILF3-DT (if available)
TreeFam:
Gene Tree for ILF3-DT (if available)

No data available for Orthologs for ILF3-DT Gene

Paralogs for ILF3-DT Gene

No data available for Paralogs for ILF3-DT Gene

Variants for ILF3-DT Gene

Sequence variations from dbSNP and Humsavar for ILF3-DT Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000108372 -- 10,652,476(-) A/G non_coding_transcript_variant
rs1000159157 -- 10,652,268(-) A/G non_coding_transcript_variant
rs1000608634 -- 10,655,535(-) A/G/T upstream_transcript_variant
rs1000958155 -- 10,655,653(-) T/A upstream_transcript_variant
rs1002494163 -- 10,653,474(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ILF3-DT Gene

Variant ID Type Subtype PubMed ID
nsv1160584 CNV deletion 26073780
nsv833745 CNV loss 17160897

Additional Variant Information for ILF3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ILF3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ILF3-DT Gene

Disorders for ILF3-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for ILF3-DT Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ILF3-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ILF3-DT Gene

Publications for ILF3-DT Gene

  1. Long noncoding RNA ILF3-AS1 promotes cell proliferation, migration, and invasion via negatively regulating miR-200b/a/429 in melanoma. (PMID: 28935763) Chen X … Sun W (Bioscience reports 2017) 2 3 58
  2. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M … Qi L (Human molecular genetics 2015) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ILF3-DT Gene

Sources for ILF3-DT Gene

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