Aliases for ILF3-DT Gene

Data sources for ILF3-DT Gene:

Subcategory (RNA class) for ILF3-DT Gene

lncRNA

Aliases for ILF3-DT Gene

External Ids for ILF3-DT Gene

Previous HGNC Symbols for ILF3-DT Gene

  • ILF3-AS1

Previous GeneCards Identifiers for ILF3-DT Gene

  • GC19M010656
  • GC19M010660

Summaries for ILF3-DT Gene

GeneCards Summary for ILF3-DT Gene

ILF3-DT (ILF3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ILF3-DT include Cervical Squamous Cell Carcinoma and Melanoma.

Additional gene information for ILF3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ILF3-DT Gene

Genomics for ILF3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ILF3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010651 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 274.9 -0.1 -129 5.3 TBP ZBTB10 BCL11A MXD4 SP1 FEZF1 CEBPA SIX5 NR2C1 MNT ILF3 ILF3-DT piR-46435 piR-61384 ZNF627 LOC100419831 KRI1 DNMT1 FBXL12 RAVER1
GH19J010717 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 19 -64.7 -64675 4.3 CHD2 TBP MXD4 SP1 FEZF1 CEBPA SIX5 NR2C1 MNT DEK DNM2 MIR638 ILF3 KRI1 EIF3G ZNF627 FBXL12 PPAN RAVER1 UBE2L4
GH19J011534 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 20.4 -883.6 -883634 5.9 TBP ZBTB10 SP1 MXD4 NR2C1 IKZF1 BRCA1 SMAD5 IRF2 CTCF CNN1 MF281430-040 ZNF136 ZNF627 ILF3 ZNF625 ZNF439 ZNF709 ZNF788P ZNF442
GH19J010110 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 27.9 +541.2 541171 5.2 ZBTB10 SP1 BCL11A POLR2A CTCF BHLHE40 ZIC2 SIN3A ZNF395 REST P2RY11 HSALNG0123896 piR-54092 ILF3 ZNF699 ZNF266 ZNF559 ZNF317 DNMT1 LOC100419831
GH19J010834 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 18.4 -181.8 -181802 2.8 TBP ZBTB10 SP1 NR2C1 MNT SMAD5 MBD2 ZNF217 POLR2A BHLHE40 C19orf38 HSALNG0123968 TMED1 KRI1 DNMT1 ILF3 ZNF491 ZNF627 ZNF441 RAVER1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ILF3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ILF3-DT Gene

Latest Assembly
chr19:10,650,571-10,654,199
(GRCh38/hg38)
Size:
3,629 bases
Orientation:
Minus strand

Previous Assembly
chr19:10,762,538-10,764,548
(GRCh37/hg19 by Entrez Gene)
Size:
2,011 bases
Orientation:
Minus strand

chr19:10,762,538-10,764,520
(GRCh37/hg19 by Ensembl)
Size:
1,983 bases
Orientation:
Minus strand

Genomic View for ILF3-DT Gene

Genes around ILF3-DT on UCSC Golden Path with GeneCards custom track
ILF3-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ILF3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ILF3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ILF3-DT Gene

Proteins for ILF3-DT Gene

Post-translational modifications for ILF3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ILF3-DT Gene

Domains & Families for ILF3-DT Gene

Gene Families for ILF3-DT Gene

genes like me logo Genes that share domains with ILF3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ILF3-DT Gene

Function for ILF3-DT Gene

Phenotypes From GWAS Catalog for ILF3-DT Gene

Phenotypes for ILF3-DT Gene

genes like me logo Genes that share phenotypes with ILF3-DT: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ILF3-DT Gene

Localization for ILF3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ILF3-DT Gene

Pathways & Interactions for ILF3-DT Gene

PathCards logo

SuperPathways for ILF3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ILF3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ILF3-DT Gene

Drugs & Compounds for ILF3-DT Gene

No Compound Related Data Available

Transcripts for ILF3-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ILF3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000446FF2_9606 lncRNA 1984 2

Ensembl: ENST00000591501 (view in UCSC) ,

LNCipedia: ILF3-DT:19,

URS000075B993_9606 lncRNA 2011 1

RefSeq: NR_024333,

URS00008B5506_9606 lncRNA 1897 3

LncBook: HSALNT0255711,

LNCipedia: ILF3-DT:15,

NONCODE: NONHSAT061081.2,

URS00008B61F6_9606 lncRNA 1849 3

LncBook: HSALNT0255704,

LNCipedia: ILF3-DT:16,

NONCODE: NONHSAT061079.2,

URS00008BC2FD_9606 lncRNA 1551 3

LncBook: HSALNT0255713,

LNCipedia: ILF3-DT:17,

NONCODE: NONHSAT061082.2,

ILF3-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ILF3-DT Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ILF3-DT Gene

No ASD Table

Relevant External Links for ILF3-DT Gene

GeneLoc Exon Structure for
ILF3-DT

Expression for ILF3-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ILF3-DT

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ILF3-DT Gene

Orthologs for ILF3-DT Gene

Evolution for ILF3-DT Gene

ENSEMBL:
Gene Tree for ILF3-DT (if available)
TreeFam:
Gene Tree for ILF3-DT (if available)

No data available for Orthologs for ILF3-DT Gene

Paralogs for ILF3-DT Gene

No data available for Paralogs for ILF3-DT Gene

Variants for ILF3-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ILF3-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ILF3-DT Gene

Variant ID Type Subtype PubMed ID
nsv1160584 CNV deletion 26073780
nsv833745 CNV loss 17160897

Additional Variant Information for ILF3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ILF3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ILF3-DT Gene

Disorders for ILF3-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for ILF3-DT Gene - From: LNC and COP

Disorder Aliases PubMed IDs
cervical squamous cell carcinoma
  • squamous cell carcinoma of cervix
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ILF3-DT

genes like me logo Genes that share disorders with ILF3-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ILF3-DT Gene

Publications for ILF3-DT Gene

  1. Long noncoding RNA ILF3-AS1 promotes cell proliferation, migration, and invasion via negatively regulating miR-200b/a/429 in melanoma. (PMID: 28935763) Chen X … Sun W (Bioscience reports 2017) 2 3 74
  2. SP1-mediated upregulation of lncRNA ILF3-AS1 functions a ceRNA for miR-212 to contribute to osteosarcoma progression via modulation of SOX5. (PMID: 30819403) Hu XH … Hao YD (Biochemical and biophysical research communications 2019) 3
  3. A 15-long non-coding RNA signature to improve prognosis prediction of cervical squamous cell carcinoma. (PMID: 29525275) Mao X … Xing H (Gynecologic oncology 2018) 74
  4. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M … Qi L (Human molecular genetics 2015) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ILF3-DT Gene

Sources for ILF3-DT Gene