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Aliases for ILF3-AS1 Gene

Subcategory (RNA class) for ILF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ILF3-AS1 Gene

  • ILF3 Antisense RNA 1 (Head To Head) 2 3 5
  • ILF3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ILF3 Antisense RNA 1 2
  • CTC-539A10.4 3

External Ids for ILF3-AS1 Gene

Previous GeneCards Identifiers for ILF3-AS1 Gene

  • GC19M010768
  • GC19M010771
  • GC19M010774
  • GC19M010778

Summaries for ILF3-AS1 Gene

GeneCards Summary for ILF3-AS1 Gene

ILF3-AS1 (ILF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ILF3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ILF3-AS1 Gene

Genomics for ILF3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ILF3-AS1 Gene

Promoters and enhancers for ILF3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I010651 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 575 -0.3 -342 5.1 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ILF3 ILF3-AS1 PIR39434 PIR56383 GC19M010652 FBXL12 ZNF627 LOC100419831 RAVER1 KRI1
GH19I010834 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 27.3 -182.2 -182153 2.4 CLOCK DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 C19orf38 TMED1 ILF3 ZNF627 ZNF441 ZNF491 KRI1 ILF3-AS1 RAVER1 QTRT1
GH19I010717 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19 -65.3 -65283 3.7 HDGF PKNOX1 FOXA2 ARNT ARID4B NEUROD1 SIN3A FEZF1 ZNF2 ZBTB7B DNM2 GC19P010718 MIR638 KRI1 EIF3G ILF3 FBXL12 RAVER1 TIMM29 PPAN
GH19I010975 Enhancer 1.1 Ensembl ENCODE 41.9 -322.8 -322767 3.1 FOXA2 SMAD1 NFIB ZNF529 MZF1 ZNF195 RARA ZEB1 NCOA2 EGR2 ZNF441 ZNF627 ZNF439 ILF3 ILF3-AS1 QTRT1 RPL18AP13 HNRNPA1P10 ZNF823 ZNF763
GH19I010700 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16.2 -47.8 -47803 1.7 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 E2F8 ZNF207 QTRT1 ZNF627 ILF3 LOC100419831 FBXL12 KRI1 DNMT1 RAVER1 YIPF2 CDC37
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ILF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ILF3-AS1 Gene

Genomic Locations for ILF3-AS1 Gene
chr19:10,651,862-10,653,872
(GRCh38/hg38)
Size:
2,011 bases
Orientation:
Minus strand
chr19:10,762,538-10,764,548
(GRCh37/hg19)

Genomic View for ILF3-AS1 Gene

Genes around ILF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ILF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ILF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ILF3-AS1 Gene

Proteins for ILF3-AS1 Gene

Post-translational modifications for ILF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ILF3-AS1 Gene

Domains & Families for ILF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ILF3-AS1 Gene

Function for ILF3-AS1 Gene

Phenotypes From GWAS Catalog for ILF3-AS1 Gene

Phenotypes for ILF3-AS1 Gene

GenomeRNAi human phenotypes for ILF3-AS1:
genes like me logo Genes that share phenotypes with ILF3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ILF3-AS1 Gene

Localization for ILF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ILF3-AS1 Gene

Pathways & Interactions for ILF3-AS1 Gene

SuperPathways for ILF3-AS1 Gene

No Data Available

Interacting Proteins for ILF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ILF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ILF3-AS1 Gene

Drugs & Compounds for ILF3-AS1 Gene

No Compound Related Data Available

Transcripts for ILF3-AS1 Gene

mRNA/cDNA for ILF3-AS1 Gene

Unigene Clusters for ILF3-AS1 Gene

ILF3 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ILF3-AS1 Gene

No ASD Table

Relevant External Links for ILF3-AS1 Gene

GeneLoc Exon Structure for
ILF3-AS1
ECgene alternative splicing isoforms for
ILF3-AS1

Expression for ILF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ILF3-AS1 Gene

SOURCE GeneReport for Unigene cluster for ILF3-AS1 Gene:

Hs.631616
genes like me logo Genes that share expression patterns with ILF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ILF3-AS1 Gene

Orthologs for ILF3-AS1 Gene

Evolution for ILF3-AS1 Gene

ENSEMBL:
Gene Tree for ILF3-AS1 (if available)
TreeFam:
Gene Tree for ILF3-AS1 (if available)

No data available for Orthologs for ILF3-AS1 Gene

Paralogs for ILF3-AS1 Gene

No data available for Paralogs for ILF3-AS1 Gene

Variants for ILF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ILF3-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000108372 -- 10,652,476(-) A/G non_coding_transcript_variant
rs1000159157 -- 10,652,268(-) A/G non_coding_transcript_variant
rs1000608634 -- 10,655,535(-) A/G/T upstream_transcript_variant
rs1000958155 -- 10,655,653(-) T/A upstream_transcript_variant
rs1002494163 -- 10,653,474(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ILF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1160584 CNV deletion 26073780
nsv833745 CNV loss 17160897

Additional Variant Information for ILF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ILF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ILF3-AS1 Gene

Disorders for ILF3-AS1 Gene

Additional Disease Information for ILF3-AS1

No disorders were found for ILF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ILF3-AS1 Gene

Publications for ILF3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M … Qi L (Human molecular genetics 2015) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ILF3-AS1 Gene

Sources for ILF3-AS1 Gene

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