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Aliases for IL7 Gene

Aliases for IL7 Gene

  • Interleukin 7 2 3 5
  • IL-7 3 4
  • Interleukin-7 3

External Ids for IL7 Gene

Previous GeneCards Identifiers for IL7 Gene

  • GC08M079682
  • GC08M079311
  • GC08M079694
  • GC08M079807
  • GC08M075134
  • GC08M079587

Summaries for IL7 Gene

Entrez Gene Summary for IL7 Gene

  • The protein encoded by this gene is a cytokine important for B and T cell development. This cytokine and the hepatocyte growth factor (HGF) form a heterodimer that functions as a pre-pro-B cell growth-stimulating factor. This cytokine is found to be a cofactor for V(D)J rearrangement of the T cell receptor beta (TCRB) during early T cell development. This cytokine can be produced locally by intestinal epithelial and epithelial goblet cells, and may serve as a regulatory factor for intestinal mucosal lymphocytes. Knockout studies in mice suggested that this cytokine plays an essential role in lymphoid cell survival. Alternative splicing results in multiple transcript variants encoding distinct isoforms. Additional splice variants have been described but their presence in normal tissues has not been confirmed.[provided by RefSeq, Dec 2010]

GeneCards Summary for IL7 Gene

IL7 (Interleukin 7) is a Protein Coding gene. Diseases associated with IL7 include Lymphopenia and Severe Combined Immunodeficiency, X-Linked. Among its related pathways are PEDF Induced Signaling and Cytokine Signaling in Immune system. Gene Ontology (GO) annotations related to this gene include cytokine activity and cytokine receptor binding.

UniProtKB/Swiss-Prot for IL7 Gene

  • Hematopoietic growth factor capable of stimulating the proliferation of lymphoid progenitors. It is important for proliferation during certain stages of B-cell maturation.

Gene Wiki entry for IL7 Gene

Additional gene information for IL7 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IL7 Gene

Genomics for IL7 Gene

GeneHancer (GH) Regulatory Elements for IL7 Gene

Promoters and enhancers for IL7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I078803 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.3 264 3.2 SMAD1 ARID4B SIN3A DMAP1 YBX1 IRF4 ZNF48 YY1 GLIS2 ZNF207 IL7 LOC105375914 ENSG00000254352
GH08I078515 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.8 +289.0 288955 2.8 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 ZNF48 GLIS2 ZNF213 PKIA IL7 ZC2HC1A PKIA-AS1 LOC105375911
GH08I078508 Enhancer 0.9 Ensembl ENCODE dbSUPER 10 +297.2 297233 0.4 CTCF JUND FOXA2 FOS ZC2HC1A IL7 PKIA GC08M078438 PKIA-AS1 LOC105375911
GH08I078849 Enhancer 0.5 FANTOM5 17.1 -44.5 -44543 0.3 MAFF MAFG BACH1 NFE2 MAFK EMSY IL7 GC08P078838 GC08P078869 LOC105375914
GH08I078507 Enhancer 0.8 ENCODE dbSUPER 10 +297.7 297727 0 CTCF ZNF654 ZNF362 TRIM22 ZNF384 REST RAD21 E4F1 SMC3 ZNF143 ZC2HC1A IL7 PKIA GC08M078438 PKIA-AS1 LOC105375911
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IL7 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the IL7 gene promoter:

Genomic Locations for IL7 Gene

Genomic Locations for IL7 Gene
chr8:78,675,743-78,805,523
(GRCh38/hg38)
Size:
129,781 bases
Orientation:
Minus strand
chr8:79,587,978-79,717,758
(GRCh37/hg19)

Genomic View for IL7 Gene

Genes around IL7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL7 Gene

Proteins for IL7 Gene

  • Protein details for IL7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13232-IL7_HUMAN
    Recommended name:
    Interleukin-7
    Protein Accession:
    P13232
    Secondary Accessions:
    • A0N0L3
    • Q5FBY5
    • Q5FBY9

    Protein attributes for IL7 Gene

    Size:
    177 amino acids
    Molecular mass:
    20187 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for IL7 Gene

    Alternative splice isoforms for IL7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IL7 Gene

Post-translational modifications for IL7 Gene

  • Glycosylation at posLast=9595, posLast=116116, and posLast=141141

No data available for DME Specific Peptides for IL7 Gene

Domains & Families for IL7 Gene

Gene Families for IL7 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Plasma proteins
  • Predicted secreted proteins

Protein Domains for IL7 Gene

Suggested Antigen Peptide Sequences for IL7 Gene

Graphical View of Domain Structure for InterPro Entry

P13232

UniProtKB/Swiss-Prot:

IL7_HUMAN :
  • Belongs to the IL-7/IL-9 family.
Family:
  • Belongs to the IL-7/IL-9 family.
genes like me logo Genes that share domains with IL7: view

Function for IL7 Gene

Molecular function for IL7 Gene

GENATLAS Biochemistry:
interleukin 7,20.2kDa,stimulating the proliferation of lymphoid progenitor cells
UniProtKB/Swiss-Prot Function:
Hematopoietic growth factor capable of stimulating the proliferation of lymphoid progenitors. It is important for proliferation during certain stages of B-cell maturation.

LifeMap Function Summary for IL7 Gene

It affects the following cells:
IL7 as growth factor is involved in stem cell differentiation protocols towards the derivation of the following cells:

Phenotypes From GWAS Catalog for IL7 Gene

Gene Ontology (GO) - Molecular Function for IL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IDA,IEA 11418668
GO:0005126 cytokine receptor binding IEA --
GO:0005139 interleukin-7 receptor binding IEA --
GO:0005515 protein binding IPI 8266077
GO:0008083 growth factor activity IEA,ISS --
genes like me logo Genes that share ontologies with IL7: view
genes like me logo Genes that share phenotypes with IL7: view

Animal Models for IL7 Gene

MGI Knock Outs for IL7:

Clone Products

  • Addgene plasmids for IL7

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for IL7 Gene

Localization for IL7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IL7 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IL7 gene
Compartment Confidence
extracellular 5
plasma membrane 2
nucleus 2
cytosol 2
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for IL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS,IEA --
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with IL7: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for IL7 Gene

Pathways & Interactions for IL7 Gene

genes like me logo Genes that share pathways with IL7: view

SIGNOR curated interactions for IL7 Gene

Activates:

Gene Ontology (GO) - Biological Process for IL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001961 positive regulation of cytokine-mediated signaling pathway IDA 11418668
GO:0002360 T cell lineage commitment IEA --
GO:0006955 immune response IEA --
GO:0006959 humoral immune response TAS 2643102
GO:0007267 cell-cell signaling TAS 2643102
genes like me logo Genes that share ontologies with IL7: view

Drugs & Compounds for IL7 Gene

(35) Drugs for IL7 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(28) Additional Compounds for IL7 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with IL7: view

Transcripts for IL7 Gene

Unigene Clusters for IL7 Gene

Interleukin 7:
Representative Sequences:

Clone Products

  • Addgene plasmids for IL7

Alternative Splicing Database (ASD) splice patterns (SP) for IL7 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6
SP1: -
SP2: - -
SP3: - - -
SP4:

Relevant External Links for IL7 Gene

GeneLoc Exon Structure for
IL7
ECgene alternative splicing isoforms for
IL7

Expression for IL7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IL7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of IL7 Gene:

IL7

SOURCE GeneReport for Unigene cluster for IL7 Gene:

Hs.591873

Evidence on tissue expression from TISSUES for IL7 Gene

  • Pancreas(4.2)
  • Blood(3.4)
  • Spleen(2.9)
  • Bone marrow(2.8)
  • Lymph node(2.8)
  • Intestine(2.3)
  • Skin(2.3)
  • Liver(2.1)
genes like me logo Genes that share expression patterns with IL7: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL7 Gene

Orthologs for IL7 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IL7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IL7 33 34
  • 99.81 (n)
cow
(Bos Taurus)
Mammalia IL7 33 34
  • 84.85 (n)
dog
(Canis familiaris)
Mammalia IL7 33 34
  • 84.39 (n)
mouse
(Mus musculus)
Mammalia Il7 33 16 34
  • 80.83 (n)
rat
(Rattus norvegicus)
Mammalia Il7 33
  • 80 (n)
oppossum
(Monodelphis domestica)
Mammalia IL7 34
  • 34 (a)
OneToOne
Species where no ortholog for IL7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IL7 Gene

ENSEMBL:
Gene Tree for IL7 (if available)
TreeFam:
Gene Tree for IL7 (if available)

Paralogs for IL7 Gene

No data available for Paralogs for IL7 Gene

Variants for IL7 Gene

Sequence variations from dbSNP and Humsavar for IL7 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000012710 -- 78,756,268(-) A/T intron_variant
rs1000052177 -- 78,752,480(-) C/T intron_variant
rs1000059242 -- 78,731,556(-) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000080875 -- 78,756,245(-) A/C intron_variant
rs1000095322 -- 78,709,981(-) C/G/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IL7 Gene

Variant ID Type Subtype PubMed ID
dgv3851n106 CNV deletion 24896259
esv2759622 CNV loss 17122850
nsv1026069 CNV gain 25217958
nsv611577 CNV gain 21841781
nsv971670 CNV duplication 23825009

Variation tolerance for IL7 Gene

Residual Variation Intolerance Score: 61.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.53; 44.11% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for IL7 Gene

Human Gene Mutation Database (HGMD)
IL7
SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL7

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IL7 Gene

Disorders for IL7 Gene

MalaCards: The human disease database

(27) MalaCards diseases for IL7 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search IL7 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for IL7

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with IL7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IL7 Gene

Publications for IL7 Gene

  1. Disulfide bond assignment in human interleukin-7 by matrix-assisted laser desorption/ionization mass spectroscopy and site-directed cysteine to serine mutational analysis. (PMID: 9407080) Cosenza L … Murphy JR (The Journal of biological chemistry 1997) 3 4 22 58
  2. Interleukin-9 polymorphism in infants with respiratory syncytial virus infection: an opposite effect in boys and girls. (PMID: 20503287) Schuurhof A … Janssen R (Pediatric pulmonology 2010) 3 44 58
  3. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  4. An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings. (PMID: 20546594) Goldstein BA … Barcellos LF (BMC genetics 2010) 3 44 58
  5. Interleukin-7 mediates glucose utilization in lymphocytes through transcriptional regulation of the hexokinase II gene. (PMID: 20200205) Chehtane M … Khaled AR (American journal of physiology. Cell physiology 2010) 3 22 58

Products for IL7 Gene

  • Addgene plasmids for IL7

Sources for IL7 Gene

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