Aliases for IL6R-AS1 Gene

Subcategory (RNA class) for IL6R-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for IL6R-AS1 Gene

  • IL6R Antisense RNA 1 2 3 5
  • IL6R-AS1 2 168
  • NONHSAG003016 92
  • HSALNG0007394 167
  • RP11-350G8.5 3

External Ids for IL6R-AS1 Gene

Summaries for IL6R-AS1 Gene

GeneCards Summary for IL6R-AS1 Gene

IL6R-AS1 (IL6R Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IL6R-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IL6R-AS1 Gene

Genomics for IL6R-AS1 Gene

GeneHancer (GH) Regulatory Elements for IL6R-AS1 Gene

Promoters and enhancers for IL6R-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J154403 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 500.7 +2.0 1987 6.9 CTCF NRF1 MYC POLR2G SP1 FOS ZNF10 EP300 ZIC2 POLR2A IL6R IL6R-AS1 ATP8B2 RNU7-57P AQP10 UBE2Q1-AS1 UBE2Q1 SHE TDRD10 SNORA58B
GH01J154384 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 12.5 +22.7 22659 2.5 POLR2G MYC CTBP1 SKI TRIM22 HINFP RELA TAF9B ZSCAN9 POLR2A ATP8B2 IL6R-AS1 RNU7-57P UBE2Q1-AS1 UBE2Q1 SHE TDRD10 C1orf189 SNAPIN UBAP2L
GH01J154437 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.6 -33.6 -33634 9.7 CTCF JUND FOS EP300 ZIC2 TRIM22 NFYB OSR2 BCL11A HDAC2 IL6R CHRNB2 IL6R-AS1 RNU7-57P ATP8B2 UBE2Q1-AS1 UBE2Q1 UBAP2L SNORA58B C1orf189
GH01J154333 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.7 +74.1 74144 2.2 CTCF SIN3A POLR2G NCOR1 KDM6A TCF7 REST ZBTB25 TGIF2 RAD21 UBE2Q1 IL6R IL6R-AS1 SNORA58B UBAP2L MIR190B TPM3 C1orf189 UBE2Q1-AS1 ATP8B2
GH01J154473 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.2 -68.9 -68867 7.8 CTCF ZIC2 ZBTB10 REST ZBTB25 RAD21 TRIM22 SMC3 OSR2 NR2F2 IL6R SHE UBE2Q1-AS1 UBE2Q1 TDRD10 CHRNB2 IL6R-AS1 RNU7-57P ATP8B2 SNORA58B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IL6R-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IL6R-AS1 Gene

Genomic Locations for IL6R-AS1 Gene
chr1:154,402,321-154,408,834
(GRCh38/hg38)
Size:
6,514 bases
Orientation:
Minus strand
chr1:154,374,804-154,379,040
(GRCh37/hg19)
Size:
4,237 bases
Orientation:
Minus strand

Genomic View for IL6R-AS1 Gene

Genes around IL6R-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL6R-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL6R-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL6R-AS1 Gene

Proteins for IL6R-AS1 Gene

Post-translational modifications for IL6R-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL6R-AS1 Gene

Domains & Families for IL6R-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IL6R-AS1 Gene

Function for IL6R-AS1 Gene

Phenotypes From GWAS Catalog for IL6R-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL6R-AS1 Gene

Localization for IL6R-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL6R-AS1 Gene

Pathways & Interactions for IL6R-AS1 Gene

PathCards logo

SuperPathways for IL6R-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IL6R-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IL6R-AS1 Gene

Drugs & Compounds for IL6R-AS1 Gene

No Compound Related Data Available

Transcripts for IL6R-AS1 Gene

mRNA/cDNA for IL6R-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for IL6R-AS1 Gene

No ASD Table

Relevant External Links for IL6R-AS1 Gene

GeneLoc Exon Structure for
IL6R-AS1

Expression for IL6R-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IL6R-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL6R-AS1 Gene

Orthologs for IL6R-AS1 Gene

Evolution for IL6R-AS1 Gene

ENSEMBL:
Gene Tree for IL6R-AS1 (if available)
TreeFam:
Gene Tree for IL6R-AS1 (if available)

No data available for Orthologs for IL6R-AS1 Gene

Paralogs for IL6R-AS1 Gene

No data available for Paralogs for IL6R-AS1 Gene

Variants for IL6R-AS1 Gene

Additional dbSNP identifiers (rs#s) for IL6R-AS1 Gene

Additional Variant Information for IL6R-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL6R-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IL6R-AS1 Gene

Disorders for IL6R-AS1 Gene

Additional Disease Information for IL6R-AS1

No disorders were found for IL6R-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IL6R-AS1 Gene

Publications for IL6R-AS1 Gene

  1. Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation. (PMID: 28839111) Soibam B (RNA (New York, N.Y.) 2017) 2 3 54

No data available for Mastermind for IL6R-AS1 Gene

Products for IL6R-AS1 Gene

Sources for IL6R-AS1 Gene