Aliases for IL21R-AS1 Gene

Subcategory (RNA class) for IL21R-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for IL21R-AS1 Gene

  • IL21R Antisense RNA 1 2 3 5
  • IL21R Antisense RNA 1 (Non-Protein Coding) 2 3
  • IL21R-AS1 2 168
  • HSALNG0110450 167
  • NONHSAG018969 92

External Ids for IL21R-AS1 Gene

Summaries for IL21R-AS1 Gene

GeneCards Summary for IL21R-AS1 Gene

IL21R-AS1 (IL21R Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IL21R-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IL21R-AS1 Gene

Genomics for IL21R-AS1 Gene

GeneHancer (GH) Regulatory Elements for IL21R-AS1 Gene

Promoters and enhancers for IL21R-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J027446 Enhancer 1.3 Ensembl ENCODE dbSUPER 523.2 +0.9 892 13 CTCF SP1 EP300 ZIC2 REST RAD21 SKI TRIM22 TBX3 POLR2A IL21R-AS1 IL4R KIAA0556 lnc-GTF3C1-3 IL21R
GH16J027548 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 31.9 -96.4 -96444 3.5 ZBTB40 ZNF217 EP300 NRF1 POLR2G SP1 PHF8 JUND ZFX ZIC2 GTF3C1 KIAA0556 IL21R-AS1 RF00017-2030
GH16J027469 Enhancer 1.1 Ensembl ENCODE 37.2 -18.1 -18071 3.8 NRF1 NCOR1 FOS CTCF TCF7 MYC RUNX1 CTBP1 SKI TEAD1 IL21R-AS1 lnc-GTF3C1-2-002 piR-33614-097 GTF3C1
GH16J027577 Enhancer 1.1 Ensembl ENCODE 31.9 -125.8 -125796 2.4 EP300 NCOR1 JUND FOS KDM6A ZBTB25 SKI TEAD1 ZKSCAN8 CTBP1 IL21R-AS1 GSG1L HE856243 KIAA0556 HSALNG0110454
GH16J027459 Enhancer 0.8 Ensembl ENCODE dbSUPER 37.4 -9.8 -9820 7.6 NR2F2 RBM22 POLR2A MAX KLF1 AGO2 ZNF366 PRDM1 lnc-GTF3C1-2-002 IL21R-AS1 lnc-GTF3C1-2-001 GTF3C1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IL21R-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IL21R-AS1 Gene

Genomic Locations for IL21R-AS1 Gene
chr16:27,447,669-27,453,393
(GRCh38/hg38)
Size:
5,725 bases
Orientation:
Minus strand
chr16:27,458,990-27,464,714
(GRCh37/hg19)
Size:
5,725 bases
Orientation:
Minus strand

Genomic View for IL21R-AS1 Gene

Genes around IL21R-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL21R-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL21R-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL21R-AS1 Gene

Proteins for IL21R-AS1 Gene

Post-translational modifications for IL21R-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL21R-AS1 Gene

Domains & Families for IL21R-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IL21R-AS1 Gene

Function for IL21R-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL21R-AS1 Gene

Localization for IL21R-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL21R-AS1 Gene

Pathways & Interactions for IL21R-AS1 Gene

PathCards logo

SuperPathways for IL21R-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IL21R-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IL21R-AS1 Gene

Drugs & Compounds for IL21R-AS1 Gene

No Compound Related Data Available

Transcripts for IL21R-AS1 Gene

mRNA/cDNA for IL21R-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for IL21R-AS1 Gene

No ASD Table

Relevant External Links for IL21R-AS1 Gene

GeneLoc Exon Structure for
IL21R-AS1

Expression for IL21R-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IL21R-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IL21R-AS1 Gene

This gene is overexpressed in Whole Blood (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IL21R-AS1

SOURCE GeneReport for Unigene cluster for IL21R-AS1 Gene:

Hs.660935
genes like me logo Genes that share expression patterns with IL21R-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL21R-AS1 Gene

Orthologs for IL21R-AS1 Gene

Evolution for IL21R-AS1 Gene

ENSEMBL:
Gene Tree for IL21R-AS1 (if available)
TreeFam:
Gene Tree for IL21R-AS1 (if available)

No data available for Orthologs for IL21R-AS1 Gene

Paralogs for IL21R-AS1 Gene

No data available for Paralogs for IL21R-AS1 Gene

Variants for IL21R-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for IL21R-AS1 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
640700 Uncertain Significance: IL21R immunodeficiency 27,448,844(-) G/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
642414 Uncertain Significance: IL21R immunodeficiency 27,449,209(-) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
645716 Uncertain Significance: IL21R immunodeficiency 27,448,634(-) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
647042 Uncertain Significance: IL21R immunodeficiency 27,448,541(-) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
651217 Uncertain Significance: IL21R immunodeficiency 27,448,628(-) C/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for IL21R-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IL21R-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3404624 CNV insertion 20981092
nsv1059454 CNV gain 25217958
nsv833179 CNV loss 17160897

Additional Variant Information for IL21R-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL21R-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IL21R-AS1 Gene

Disorders for IL21R-AS1 Gene

Additional Disease Information for IL21R-AS1

No disorders were found for IL21R-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IL21R-AS1 Gene

Publications for IL21R-AS1 Gene

  1. Circulating 'lncRNA OTTHUMT00000387022' from monocytes as a novel biomarker for coronary artery disease. (PMID: 26857419) Cai Y … Zhou L (Cardiovascular research 2016) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for IL21R-AS1 Gene

Sources for IL21R-AS1 Gene