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Aliases for IL21-AS1 Gene

Subcategory (RNA class) for IL21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IL21-AS1 Gene

  • IL21 Antisense RNA 1 2 3 5
  • IL21 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IL21-AS1 Gene

Previous GeneCards Identifiers for IL21-AS1 Gene

  • GC04P123541

Summaries for IL21-AS1 Gene

GeneCards Summary for IL21-AS1 Gene

IL21-AS1 (IL21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IL21-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IL21-AS1 Gene

Genomics for IL21-AS1 Gene

GeneHancer (GH) Regulatory Elements for IL21-AS1 Gene

Promoters and enhancers for IL21-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I122795 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.3 +179.2 179169 4.5 HDAC1 PKNOX1 TAF9B ZBTB40 ZNF766 ZNF366 ATF7 RXRA CEBPB USF2 FGF2 NUDT6 SPATA5 IL21-AS1 CETN4P SPRY1 RPL34P12 LOC727709
GH04I122699 Enhancer 1.1 Ensembl ENCODE 10.1 +81.3 81310 1 HDGF PKNOX1 ATF1 POLR2B ZNF766 CBX5 GATA2 ATF7 REST ZNF518A BBS12 SPATA5 EXOSC9 ENSG00000237868 FGF2 IL21-AS1 CETN4P IL21
GH04I122660 Enhancer 1 Ensembl ENCODE 11 +42.5 42517 1.3 HDAC1 ATF1 FOXA2 ZBTB40 ZNF766 ATF7 CREM CEBPB ZEB2 ZNF592 IL21-AS1 BBS12 CETN4P FGF2 IL21
GH04I122872 Enhancer 1.1 Ensembl ENCODE dbSUPER 9 +255.0 255001 2.2 PKNOX1 TEAD4 JUN CEBPG FOSL1 FOSL2 FOS ATF7 TRIM24 SMARCE1 FGF2 IL21-AS1 NUDT6 ENSG00000273007 RPS26P23
GH04I122583 Enhancer 0.8 Ensembl ENCODE 11.1 -34.5 -34478 1.4 ESRRA JUN ZNF133 JUNB BATF ATF2 IRF4 JUND POLR2A SCRT2 IL21-AS1 KIAA1109 IL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IL21-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IL21-AS1 Gene

Genomic Locations for IL21-AS1 Gene
chr4:122,618,983-122,689,156
(GRCh38/hg38)
Size:
70,174 bases
Orientation:
Plus strand
chr4:123,540,138-123,610,311
(GRCh37/hg19)

Genomic View for IL21-AS1 Gene

Genes around IL21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL21-AS1 Gene

Proteins for IL21-AS1 Gene

Post-translational modifications for IL21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL21-AS1 Gene

Domains & Families for IL21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IL21-AS1 Gene

Function for IL21-AS1 Gene

Phenotypes From GWAS Catalog for IL21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL21-AS1 Gene

Localization for IL21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL21-AS1 Gene

Pathways & Interactions for IL21-AS1 Gene

SuperPathways for IL21-AS1 Gene

No Data Available

Interacting Proteins for IL21-AS1 Gene

Gene Ontology (GO) - Biological Process for IL21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IL21-AS1 Gene

Drugs & Compounds for IL21-AS1 Gene

No Compound Related Data Available

Transcripts for IL21-AS1 Gene

mRNA/cDNA for IL21-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IL21-AS1 Gene

IL21 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IL21-AS1 Gene

No ASD Table

Relevant External Links for IL21-AS1 Gene

GeneLoc Exon Structure for
IL21-AS1
ECgene alternative splicing isoforms for
IL21-AS1

Expression for IL21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IL21-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IL21-AS1 Gene

This gene is overexpressed in Testis (x28.5), Vagina (x6.8), and Bladder (x6.0).

SOURCE GeneReport for Unigene cluster for IL21-AS1 Gene:

Hs.439487
genes like me logo Genes that share expression patterns with IL21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL21-AS1 Gene

Orthologs for IL21-AS1 Gene

Evolution for IL21-AS1 Gene

ENSEMBL:
Gene Tree for IL21-AS1 (if available)
TreeFam:
Gene Tree for IL21-AS1 (if available)

No data available for Orthologs for IL21-AS1 Gene

Paralogs for IL21-AS1 Gene

No data available for Paralogs for IL21-AS1 Gene

Variants for IL21-AS1 Gene

Sequence variations from dbSNP and Humsavar for IL21-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs587777338 pathogenic, Common variable immunodeficiency 11 122,620,866(+) A/G splice_acceptor_variant
rs374097344 uncertain-significance, not specified 122,620,885(+) T/A non_coding_transcript_variant
rs1000007262 -- 122,625,443(+) G/A non_coding_transcript_variant
rs1000124408 -- 122,676,101(+) T/G intron_variant
rs1000142025 -- 122,636,255(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IL21-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3602030 CNV loss 21293372

Additional Variant Information for IL21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IL21-AS1 Gene

Disorders for IL21-AS1 Gene

Additional Disease Information for IL21-AS1

No disorders were found for IL21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IL21-AS1 Gene

Publications for IL21-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for IL21-AS1 Gene

Sources for IL21-AS1 Gene

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