Aliases for IL12A-AS1 Gene

Subcategory (RNA class) for IL12A-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for IL12A-AS1 Gene

  • IL12A Antisense RNA 1 2 3 5
  • IL12A-AS1 2 168
  • CTD-2049J23.2 3
  • NONHSAG036523 92
  • HSALNG0030208 167
  • HSALNG0030216 167
  • ILAS1-AS1 3

External Ids for IL12A-AS1 Gene

Previous GeneCards Identifiers for IL12A-AS1 Gene

  • GC03M159632

Summaries for IL12A-AS1 Gene

GeneCards Summary for IL12A-AS1 Gene

IL12A-AS1 (IL12A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with IL12A-AS1 include Behcet Syndrome.

Additional gene information for IL12A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IL12A-AS1 Gene

Genomics for IL12A-AS1 Gene

GeneHancer (GH) Regulatory Elements for IL12A-AS1 Gene

Promoters and enhancers for IL12A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J160226 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 500.7 +0.8 773 2.2 USF1 ZFX CTCF ZIC2 REST GABPA ZBTB26 CTBP1 MYC HDAC2 IL12A-AS1 lnc-SMC4-1 C3orf80 lnc-C3orf80-1
GH03J160168 Enhancer 0.8 Ensembl ENCODE 12.8 +57.4 57372 1.8 JUND FOS RBM25 ZNF316 NFE2 FOSL1 MAFK NFE2L1 MAFG ZNF639 C3orf80 IL12A-AS1 piR-52008-012 lnc-C3orf80-1
GH03J159897 Enhancer 0.9 Ensembl ENCODE dbSUPER 10 +328.2 328172 3 ATF2 OSR2 ZBTB17 POLR2A TCF12 SPI1 NR2F2 ZFHX2 PRDM6 FEZF1 IL12A C3orf80 IL12A-AS1 SCHIP1 piR-61945-369 LOC101928351 IQCJ-SCHIP1
GH03J160413 Enhancer 0.8 Ensembl ENCODE 10.6 -187.2 -187164 0.5 CTCF REST RAD21 TRIM22 FOXA2 SMC3 ZNF384 POLR2H SPI1 ZZZ3 B3GAT3P1 IL12A-AS1 C3orf80 IL12A RF00254 SMC4 ENSG00000248710 TRIM59-IFT80-001
GH03J159900 Enhancer 0.8 Ensembl dbSUPER 10 +322.8 322772 3.4 OSR2 CREB1 SPI1 NR2C1 BATF IKZF1 NR2F1 HIC1 PRDM6 ATF2 IL12A C3orf80 IL12A-AS1 SCHIP1 piR-61945-369 LOC101928351
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IL12A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IL12A-AS1 Gene

Genomic Locations for IL12A-AS1 Gene
chr3:159,902,045-160,226,673
(GRCh38/hg38)
Size:
324,629 bases
Orientation:
Minus strand
chr3:159,631,189-159,943,086
(GRCh37/hg19)
Size:
311,898 bases
Orientation:
Minus strand

Genomic View for IL12A-AS1 Gene

Genes around IL12A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IL12A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL12A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL12A-AS1 Gene

Proteins for IL12A-AS1 Gene

Post-translational modifications for IL12A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL12A-AS1 Gene

Domains & Families for IL12A-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IL12A-AS1 Gene

Function for IL12A-AS1 Gene

Phenotypes From GWAS Catalog for IL12A-AS1 Gene

Human Phenotype Ontology for IL12A-AS1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL12A-AS1 Gene

Localization for IL12A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL12A-AS1 Gene

Pathways & Interactions for IL12A-AS1 Gene

PathCards logo

SuperPathways for IL12A-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IL12A-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IL12A-AS1 Gene

Drugs & Compounds for IL12A-AS1 Gene

No Compound Related Data Available

Transcripts for IL12A-AS1 Gene

mRNA/cDNA for IL12A-AS1 Gene

24 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
14 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
14 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for IL12A-AS1 Gene

No ASD Table

Relevant External Links for IL12A-AS1 Gene

GeneLoc Exon Structure for
IL12A-AS1

Expression for IL12A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IL12A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IL12A-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x14.9), Testis (x9.9), Brain - Cortex (x5.6), and Brain - Frontal Cortex (BA9) (x5.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IL12A-AS1

genes like me logo Genes that share expression patterns with IL12A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL12A-AS1 Gene

Orthologs for IL12A-AS1 Gene

Evolution for IL12A-AS1 Gene

ENSEMBL:
Gene Tree for IL12A-AS1 (if available)
TreeFam:
Gene Tree for IL12A-AS1 (if available)

No data available for Orthologs for IL12A-AS1 Gene

Paralogs for IL12A-AS1 Gene

No data available for Paralogs for IL12A-AS1 Gene

Variants for IL12A-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for IL12A-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
708885 Benign: not provided 159,995,428(-) G/A MISSENSE_VARIANT
713905 Likely Benign: not provided 159,995,456(-) C/T MISSENSE_VARIANT
721071 Benign: not provided 159,995,457(-) G/A SYNONYMOUS_VARIANT
729130 Benign: not provided 159,993,805(-) A/G SYNONYMOUS_VARIANT
762736 Likely Benign: not provided 159,993,053(-) G/A SYNONYMOUS_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for IL12A-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IL12A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv948e214 CNV loss 21293372
esv24661 CNV loss 19812545
esv24820 CNV gain 19812545
esv2660532 CNV deletion 23128226
esv2676986 CNV deletion 23128226
esv3327982 CNV insertion 20981092
esv3358384 CNV duplication 20981092
esv3385188 CNV duplication 20981092
esv3569078 CNV loss 25503493
esv3584505 CNV gain 24956385
esv3598375 CNV loss 21293372
esv3598378 CNV loss 21293372
esv3598381 CNV gain 21293372
esv3598382 CNV loss 21293372
nsv1114443 CNV deletion 24896259
nsv1117037 CNV deletion 24896259
nsv1142376 CNV tandem duplication 24896259
nsv1142377 CNV tandem duplication 24896259
nsv4086 CNV deletion 18451855
nsv4087 CNV insertion 18451855
nsv507132 OTHER sequence alteration 20534489
nsv521069 CNV loss 19592680
nsv819439 CNV loss 19587683
nsv829769 CNV gain 17160897
nsv963370 CNV duplication 23825009
nsv963371 CNV duplication 23825009
nsv997776 CNV gain 25217958

Additional Variant Information for IL12A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL12A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IL12A-AS1 Gene

Disorders for IL12A-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for IL12A-AS1 Gene - From: Orphanet and DISEASES

Disorder Aliases PubMed IDs
behcet syndrome
  • behcet disease; bd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for IL12A-AS1

genes like me logo Genes that share disorders with IL12A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IL12A-AS1 Gene

Publications for IL12A-AS1 Gene

  1. Brief report: association of CCR1, KLRC4, IL12A-AS1, STAT4, and ERAP1 With Behçet's disease in Iranians. (PMID: 26097239) Sousa I … Oliveira SA (Arthritis & rheumatology (Hoboken, N.J.) 2015) 3 54
  2. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. (PMID: 23377640) GENDEP Investigators … STAR*D Investigators (The American journal of psychiatry 2013) 3 54
  3. Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1. (PMID: 23291587) Kirino Y … Kastner DL (Nature genetics 2013) 3 54
  4. Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. (PMID: 21833088) International Multiple Sclerosis Genetics Consortium … Compston A (Nature 2011) 3 54
  5. Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. (PMID: 21399635) Mells GF … Anderson CA (Nature genetics 2011) 3 54

Products for IL12A-AS1 Gene

Sources for IL12A-AS1 Gene