Aliases for IL10RB-DT Gene

Data sources for IL10RB-DT Gene:

RNA type for IL10RB-DT Gene

lncRNA

Aliases for IL10RB-DT Gene

External Ids for IL10RB-DT Gene

Previous HGNC Symbols for IL10RB-DT Gene

  • IL10RB-AS1

Summaries for IL10RB-DT Gene

GeneCards Summary for IL10RB-DT Gene

IL10RB-DT (IL10RB Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with IL10RB-DT include Brain Germinoma.

Additional gene information for IL10RB-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IL10RB-DT Gene

Genomics for IL10RB-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IL10RB-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J033264 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 255.1 -1.7 -1669 6.6 BCLAF1 ZNF207 ZNF600 POLR2A CEBPA ZNF10 NFIC ZIC2 ZBTB10 MXD4 IL10RB IL10RB-DT IFNAR2 CFAP298 RF00994-602 ENSG00000249624 IFNAR1 NONHSAG032698.2
GH21J033265 Promoter/Enhancer 0.6 EPDnew dbSUPER 250.7 +1.6 1648 0.1 POLR2A IFNAR2 IL10RB IL10RB-DT HSALNG0132750 ENSG00000249624 NONHSAG032698.2
GH21J033261 Enhancer 0.6 ENCODE dbSUPER 0.7 +4.6 4595 0.9 BHLHE40 SPI1 POLR2A CEBPB HSALNG0132750 IL10RB IFNAR2 DNAJC28 IL10RB-DT ENSG00000249624 NONHSAG032698.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IL10RB-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IL10RB-DT Gene

Latest Assembly
chr21:33,262,389-33,266,324
(GRCh38/hg38)
Size:
3,936 bases
Orientation:
Minus strand

Previous Assembly
chr21:34,637,937-34,638,565
(GRCh37/hg19 by Entrez Gene)
Size:
629 bases
Orientation:
Minus strand

chr21:34,636,178-34,638,565
(GRCh37/hg19 by Ensembl)
Size:
2,388 bases
Orientation:
Minus strand

Genomic View for IL10RB-DT Gene

Genes around IL10RB-DT on UCSC Golden Path with GeneCards custom track
IL10RB-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
IL10RB-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IL10RB-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IL10RB-DT Gene

Proteins for IL10RB-DT Gene

Post-translational modifications for IL10RB-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for IL10RB-DT Gene

Domains & Families for IL10RB-DT Gene

Gene Families for IL10RB-DT Gene

genes like me logo Genes that share domains with IL10RB-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IL10RB-DT Gene

Function for IL10RB-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IL10RB-DT Gene

Localization for IL10RB-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IL10RB-DT Gene

Pathways & Interactions for IL10RB-DT Gene

PathCards logo

SuperPathways for IL10RB-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for IL10RB-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IL10RB-DT Gene

Drugs & Compounds for IL10RB-DT Gene

No Compound Related Data Available

Transcripts for IL10RB-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for IL10RB-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004556A5_9606 lncRNA 2230 2

Ensembl: ENST00000411998 (view in UCSC) ,

LNCipedia: IL10RB-DT:17,

URS000075CF5F_9606 lncRNA 469 1

RefSeq: NR_038974,

URS00008B3FE1_9606 lncRNA 3702 3

LncBook: HSALNT0272880,

LNCipedia: IL10RB-DT:19,

NONCODE: NONHSAT081776.2,

URS0001BD2664_9606 lncRNA 3700 1

LncBook: HSALNT0272880,

URS0001BD74E7_9606 lncRNA 2416 1

LncBook: HSALNT0272892,

IL10RB-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for IL10RB-DT Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for IL10RB-DT Gene

No ASD Table

Relevant External Links for IL10RB-DT Gene

GeneLoc Exon Structure for
IL10RB-DT

Expression for IL10RB-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IL10RB-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IL10RB-DT Gene

Orthologs for IL10RB-DT Gene

Evolution for IL10RB-DT Gene

ENSEMBL:
Gene Tree for IL10RB-DT (if available)
TreeFam:
Gene Tree for IL10RB-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for IL10RB-DT

No data available for Orthologs for IL10RB-DT Gene

Paralogs for IL10RB-DT Gene

No data available for Paralogs for IL10RB-DT Gene

Variants for IL10RB-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for IL10RB-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for IL10RB-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IL10RB-DT
Leiden Open Variation Database (LOVD)
IL10RB-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IL10RB-DT Gene

Disorders for IL10RB-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for IL10RB-DT Gene - From: COP

Disorder Aliases PubMed IDs
brain germinoma
  • germinoma of the brain
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for IL10RB-DT

genes like me logo Genes that share disorders with IL10RB-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IL10RB-DT Gene

Publications for IL10RB-DT Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for IL10RB-DT Gene

Sources for IL10RB-DT Gene