Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IGSF11-AS1 Gene

Subcategory (RNA class) for IGSF11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IGSF11-AS1 Gene

  • IGSF11 Antisense RNA 1 2 3 5
  • IGSF11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for IGSF11-AS1 Gene

Previous GeneCards Identifiers for IGSF11-AS1 Gene

  • GC03P118663

Summaries for IGSF11-AS1 Gene

GeneCards Summary for IGSF11-AS1 Gene

IGSF11-AS1 (IGSF11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IGSF11-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGSF11-AS1 Gene

Genomics for IGSF11-AS1 Gene

GeneHancer (GH) Regulatory Elements for IGSF11-AS1 Gene

Promoters and enhancers for IGSF11-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I118962 Enhancer 0.5 dbSUPER 12.3 +25.1 25111 11.8 MITF RCOR1 EBF1 PRDM10 CHD2 SPI1 IGSF11-AS1 IGSF11 COX17 GC03M119012
GH03I118991 Enhancer 0.5 ENCODE dbSUPER 10.6 +48.9 48916 0.2 CREB1 IGSF11-AS1 GC03M119012 IGSF11
GH03I118974 Enhancer 0.4 dbSUPER 11.7 +31.6 31570 1.1 RFX1 BMI1 IGSF11-AS1 GC03M119012 IGSF11
GH03I118992 Enhancer 0.4 ENCODE dbSUPER 11.5 +48.3 48276 0.2 IGSF11-AS1 GC03M119012 IGSF11
GH03I118976 Enhancer 0.3 dbSUPER 11.7 +34.8 34757 2.4 PRDM10 IGSF11-AS1 IGSF11 GC03M119012
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGSF11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGSF11-AS1 Gene

Genomic Locations for IGSF11-AS1 Gene
chr3:118,943,073-118,948,241
(GRCh38/hg38)
Size:
5,169 bases
Orientation:
Plus strand
chr3:118,661,920-118,667,088
(GRCh37/hg19)

Genomic View for IGSF11-AS1 Gene

Genes around IGSF11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGSF11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGSF11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGSF11-AS1 Gene

Proteins for IGSF11-AS1 Gene

Post-translational modifications for IGSF11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGSF11-AS1 Gene

Domains & Families for IGSF11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGSF11-AS1 Gene

Function for IGSF11-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGSF11-AS1 Gene

Localization for IGSF11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGSF11-AS1 Gene

Pathways & Interactions for IGSF11-AS1 Gene

SuperPathways for IGSF11-AS1 Gene

No Data Available

Interacting Proteins for IGSF11-AS1 Gene

Gene Ontology (GO) - Biological Process for IGSF11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGSF11-AS1 Gene

Drugs & Compounds for IGSF11-AS1 Gene

No Compound Related Data Available

Transcripts for IGSF11-AS1 Gene

mRNA/cDNA for IGSF11-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IGSF11-AS1 Gene

IGSF11 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGSF11-AS1 Gene

No ASD Table

Relevant External Links for IGSF11-AS1 Gene

GeneLoc Exon Structure for
IGSF11-AS1
ECgene alternative splicing isoforms for
IGSF11-AS1

Expression for IGSF11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGSF11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IGSF11-AS1 Gene

This gene is overexpressed in Testis (x52.1).

SOURCE GeneReport for Unigene cluster for IGSF11-AS1 Gene:

Hs.660823
genes like me logo Genes that share expression patterns with IGSF11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGSF11-AS1 Gene

Orthologs for IGSF11-AS1 Gene

Evolution for IGSF11-AS1 Gene

ENSEMBL:
Gene Tree for IGSF11-AS1 (if available)
TreeFam:
Gene Tree for IGSF11-AS1 (if available)

No data available for Orthologs for IGSF11-AS1 Gene

Paralogs for IGSF11-AS1 Gene

No data available for Paralogs for IGSF11-AS1 Gene

Variants for IGSF11-AS1 Gene

Sequence variations from dbSNP and Humsavar for IGSF11-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000031433 -- 118,946,585(+) G/A intron_variant
rs1000984751 -- 118,945,941(+) T/A non_coding_transcript_variant
rs1001087462 -- 118,945,401(+) T/C intron_variant
rs1001723154 -- 118,942,014(+) G/A upstream_transcript_variant
rs1001834521 -- 118,946,803(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for IGSF11-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1011135 CNV gain 25217958

Additional Variant Information for IGSF11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGSF11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IGSF11-AS1 Gene

Disorders for IGSF11-AS1 Gene

Additional Disease Information for IGSF11-AS1

No disorders were found for IGSF11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGSF11-AS1 Gene

Publications for IGSF11-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for IGSF11-AS1 Gene

Sources for IGSF11-AS1 Gene

Content
Loading form....