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Aliases for IGLV3-12 Gene

Aliases for IGLV3-12 Gene

  • Immunoglobulin Lambda Variable 3-12 2 3 5
  • IGLV312 3
  • V2-8 3

External Ids for IGLV3-12 Gene

Previous GeneCards Identifiers for IGLV3-12 Gene

  • GC22U990154
  • GC22P021439
  • GC22P023114
  • GC22P022800
  • GC22P022846
  • GC22P022896
  • GC22P022954
  • GC22P023028
  • GC22P023122
  • GC22P023175
  • GC22P023360

Summaries for IGLV3-12 Gene

GeneCards Summary for IGLV3-12 Gene

IGLV3-12 (Immunoglobulin Lambda Variable 3-12) is a Protein Coding gene. An important paralog of this gene is IGLV3-9.

UniProtKB/Swiss-Prot for IGLV3-12 Gene

  • V region of the variable domain of immunoglobulin light chains that participates in the antigen recognition (PubMed:24600447). Immunoglobulins, also known as antibodies, are membrane-bound or secreted glycoproteins produced by B lymphocytes. In the recognition phase of humoral immunity, the membrane-bound immunoglobulins serve as receptors which, upon binding of a specific antigen, trigger the clonal expansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effector phase of humoral immunity, which results in the elimination of bound antigens (PubMed:20176268, PubMed:22158414). The antigen binding site is formed by the variable domain of one heavy chain, together with that of its associated light chain. Thus, each immunoglobulin has two antigen binding sites with remarkable affinity for a particular antigen. The variable domains are assembled by a process called V-(D)-J rearrangement and can then be subjected to somatic hypermutations which, after exposure to antigen and selection, allow affinity maturation for a particular antigen (PubMed:17576170, PubMed:20176268).

Additional gene information for IGLV3-12 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGLV3-12 Gene

Genomics for IGLV3-12 Gene

GeneHancer (GH) Regulatory Elements for IGLV3-12 Gene

Promoters and enhancers for IGLV3-12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J022770 Enhancer 1 ENCODE dbSUPER 650.7 -1.4 -1432 0.2 HDAC1 PKNOX1 RB1 RAD21 ZNF143 ZFP91 ATF7 CREM SMARCA5 ZNF263 IGLV3-12 IGLV5-52 TOP3B ENSG00000272578 IGLV2-5 IGLV3-4 ENSG00000272779 ENSG00000234630 GC22P023458 IGL
GH22J022774 Enhancer 0.7 ENCODE dbSUPER 0.7 +2.5 2499 0.2 IKZF1 TSC22D4 EBF1 MEF2B IKZF2 SPI1 ENSG00000231392 IGLV2-5 IGLV3-4 IGLV3-12 IGL
GH22J022765 Enhancer 0.6 dbSUPER 0.7 -4.7 -4656 4.3 CTCF KLF1 MCM3 ATF1 ZBED1 MCM5 MCM2 MCM7 ZNF157 ATF3 TOP3B ZNF70 IGLV5-52 ENSG00000272578 IGLV2-5 IGLV3-4 ENSG00000225544 ENSG00000234630 ASLP1 GC22P023458
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGLV3-12 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGLV3-12 Gene

Genomic Locations for IGLV3-12 Gene
chr22:22,771,824-22,772,582
(GRCh38/hg38)
Size:
759 bases
Orientation:
Plus strand
chr22:23,114,317-23,115,079
(GRCh37/hg19)
Size:
763 bases
Orientation:
Plus strand

Genomic View for IGLV3-12 Gene

Genes around IGLV3-12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGLV3-12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGLV3-12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGLV3-12 Gene

Proteins for IGLV3-12 Gene

  • Protein details for IGLV3-12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A075B6K2-LV312_HUMAN
    Recommended name:
    Immunoglobulin lambda variable 3-12
    Protein Accession:
    A0A075B6K2

    Protein attributes for IGLV3-12 Gene

    Size:
    115 amino acids
    Molecular mass:
    12387 Da
    Quaternary structure:
    • Immunoglobulins are composed of two identical heavy chains and two identical light chains; disulfide-linked.
    SequenceCaution:
    • Sequence=EAW59536.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for IGLV3-12 Gene

Post-translational modifications for IGLV3-12 Gene

No Post-translational modifications

Other Protein References for IGLV3-12 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGLV3-12 Gene

Domains & Families for IGLV3-12 Gene

Gene Families for IGLV3-12 Gene

Protein Domains for IGLV3-12 Gene

Suggested Antigen Peptide Sequences for IGLV3-12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGLV3-12: view

No data available for UniProtKB/Swiss-Prot for IGLV3-12 Gene

Function for IGLV3-12 Gene

Molecular function for IGLV3-12 Gene

UniProtKB/Swiss-Prot Function:
V region of the variable domain of immunoglobulin light chains that participates in the antigen recognition (PubMed:24600447). Immunoglobulins, also known as antibodies, are membrane-bound or secreted glycoproteins produced by B lymphocytes. In the recognition phase of humoral immunity, the membrane-bound immunoglobulins serve as receptors which, upon binding of a specific antigen, trigger the clonal expansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effector phase of humoral immunity, which results in the elimination of bound antigens (PubMed:20176268, PubMed:22158414). The antigen binding site is formed by the variable domain of one heavy chain, together with that of its associated light chain. Thus, each immunoglobulin has two antigen binding sites with remarkable affinity for a particular antigen. The variable domains are assembled by a process called V-(D)-J rearrangement and can then be subjected to somatic hypermutations which, after exposure to antigen and selection, allow affinity maturation for a particular antigen (PubMed:17576170, PubMed:20176268).

Gene Ontology (GO) - Molecular Function for IGLV3-12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003823 antigen binding IEA --
genes like me logo Genes that share ontologies with IGLV3-12: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGLV3-12 Gene

Localization for IGLV3-12 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IGLV3-12 Gene

Secreted. Cell membrane.

Gene Ontology (GO) - Cellular Components for IGLV3-12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IBA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with IGLV3-12: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGLV3-12 Gene

Pathways & Interactions for IGLV3-12 Gene

SuperPathways for IGLV3-12 Gene

No Data Available

Interacting Proteins for IGLV3-12 Gene

Gene Ontology (GO) - Biological Process for IGLV3-12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002250 adaptive immune response IEA --
GO:0002376 immune system process IEA --
GO:0002377 immunoglobulin production IBA --
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with IGLV3-12: view

No data available for Pathways by source and SIGNOR curated interactions for IGLV3-12 Gene

Drugs & Compounds for IGLV3-12 Gene

No Compound Related Data Available

Transcripts for IGLV3-12 Gene

mRNA/cDNA for IGLV3-12 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGLV3-12 Gene

No ASD Table

Relevant External Links for IGLV3-12 Gene

GeneLoc Exon Structure for
IGLV3-12
ECgene alternative splicing isoforms for
IGLV3-12

Expression for IGLV3-12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGLV3-12 Gene

mRNA differential expression in normal tissues according to GTEx for IGLV3-12 Gene

This gene is overexpressed in Spleen (x16.1), Whole Blood (x13.8), Small Intestine - Terminal Ileum (x4.6), and Colon - Transverse (x4.2).

Protein differential expression in normal tissues from HIPED for IGLV3-12 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IGLV3-12 Gene



Protein tissue co-expression partners for IGLV3-12 Gene

genes like me logo Genes that share expression patterns with IGLV3-12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGLV3-12 Gene

Orthologs for IGLV3-12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGLV3-12 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 34
  • 63 (a)
ManyToMany
-- 34
  • 63 (a)
ManyToMany
-- 34
  • 63 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 55 (a)
OneToMany
Species where no ortholog for IGLV3-12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGLV3-12 Gene

ENSEMBL:
Gene Tree for IGLV3-12 (if available)
TreeFam:
Gene Tree for IGLV3-12 (if available)

Paralogs for IGLV3-12 Gene

genes like me logo Genes that share paralogs with IGLV3-12: view

Variants for IGLV3-12 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for IGLV3-12 Gene

LV312_HUMAN-A0A075B6K2
There are several alleles. The sequence shown is that of IMGT allele IGLV3-12*02.

Additional Variant Information for IGLV3-12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGLV3-12

No data available for Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGLV3-12 Gene

Disorders for IGLV3-12 Gene

No disorders were found for IGLV3-12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGLV3-12 Gene

Publications for IGLV3-12 Gene

  1. Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics. (PMID: 24600447) Lefranc MP (Frontiers in immunology 2014) 4 58
  2. Molecular programming of B cell memory. (PMID: 22158414) McHeyzer-Williams M … McHeyzer-Williams L (Nature reviews. Immunology 2011) 4 58
  3. Structure and function of immunoglobulins. (PMID: 20176268) Schroeder HW … Cavacini L (The Journal of allergy and clinical immunology 2010) 4 58
  4. Immunoglobulin somatic hypermutation. (PMID: 17576170) Teng G … Papavasiliou FN (Annual review of genetics 2007) 4 58
  5. Recognition of immunoglobulins by Fcgamma receptors. (PMID: 11955599) Radaev S … Sun P (Molecular immunology 2002) 3 58

Products for IGLV3-12 Gene

Sources for IGLV3-12 Gene

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