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Aliases for IGKV1OR2-108 Gene

Aliases for IGKV1OR2-108 Gene

  • Immunoglobulin Kappa Variable 1/OR2-108 (Non-Functional) 2 3 5
  • Immunoglobulin Orphon (Transposed Element) 1 2 3
  • Immunoglobulin Kappa Variable 1/OR2-108 2
  • IGKV1/OR2-108 3
  • IGKV1OR2108 3
  • IGO1 3

External Ids for IGKV1OR2-108 Gene

Previous GeneCards Identifiers for IGKV1OR2-108 Gene

  • GC02U990146
  • GC02P114166

Summaries for IGKV1OR2-108 Gene

GeneCards Summary for IGKV1OR2-108 Gene

IGKV1OR2-108 (Immunoglobulin Kappa Variable 1/OR2-108 (Non-Functional)) is a Protein Coding gene. An important paralog of this gene is IGKV1-39.

Additional gene information for IGKV1OR2-108 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGKV1OR2-108 Gene

Genomics for IGKV1OR2-108 Gene

GeneHancer (GH) Regulatory Elements for IGKV1OR2-108 Gene

Promoters and enhancers for IGKV1OR2-108 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I113406 Enhancer 0.5 Ensembl 550.8 +0.0 5 0.4 ZFP69B KLF1 MAZ POLR2A ZNF692 ZNF10 ZIC2 IGKV1OR2-108 ENSG00000272563 LOC101927400
GH02I113389 Enhancer 1.1 Ensembl ENCODE 0.4 -15.8 -15768 1.5 ATF1 FOXA2 ARNT ARID4B ZNF2 ZNF213 E2F8 ARID2 ZNF207 ZNF143 PAX8-AS1 PAX8 RNU6-1180P PGM5P4-AS1 CBWD2 FOXD4L1 IGKV1OR2-108 GC02P113489 LOC101927400
GH02I113376 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 -29.4 -29413 1.2 SRF PKNOX1 ZNF687 JUNB ELF1 DPF2 ATF2 IKZF1 ATF7 MLLT1 IL1RN IL36B PAX8 PAX8-AS1 PSD4 RNU6-1180P CBWD2 IL36G GC02P113489 IGKV1OR2-108
GH02I113430 Enhancer 0.8 Ensembl ENCODE 0.3 +25.7 25704 3 ZNF740 CAVIN1 NR4A1 TEAD2 ELF1 PYGO2 GTF2A2 ZNF592 IRF9 MEF2D ENSG00000272563 FOXD4L1 IGKV1OR2-108
GH02I113370 Enhancer 0.7 ENCODE 0.3 -35.7 -35707 0.2 ELF3 CTCF MXI1 ARNT ARID4B RAD21 YY1 CC2D1A ARID2 ZSCAN5C PAX8 PAX8-AS1 RNU6-1180P IL1RN GC02P113489 IGKV1OR2-108 LOC101927400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGKV1OR2-108 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGKV1OR2-108 Gene

Genomic Locations for IGKV1OR2-108 Gene
chr2:113,406,396-113,406,872
(GRCh38/hg38)
Size:
477 bases
Orientation:
Plus strand
chr2:114,163,973-114,164,486
(GRCh37/hg19)

Genomic View for IGKV1OR2-108 Gene

Genes around IGKV1OR2-108 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGKV1OR2-108 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGKV1OR2-108 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for IGKV1OR2-108 Gene

Proteins for IGKV1OR2-108 Gene

  • Protein details for IGKV1OR2-108 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B7D4
    Recommended name:
    Immunoglobulin kappa variable 1/OR2-108 (non-functional)
    Protein Accession:
    A0A075B7D4

    Protein attributes for IGKV1OR2-108 Gene

    Size:
    117 amino acids
    Molecular mass:
    12535 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGKV1OR2-108 Gene

Post-translational modifications for IGKV1OR2-108 Gene

No Post-translational modifications

Other Protein References for IGKV1OR2-108 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGKV1OR2-108 Gene

Domains & Families for IGKV1OR2-108 Gene

Gene Families for IGKV1OR2-108 Gene

Protein Domains for IGKV1OR2-108 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGKV1OR2-108: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGKV1OR2-108 Gene

Function for IGKV1OR2-108 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGKV1OR2-108 Gene

Localization for IGKV1OR2-108 Gene

Gene Ontology (GO) - Cellular Components for IGKV1OR2-108 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with IGKV1OR2-108: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGKV1OR2-108 Gene

Pathways & Interactions for IGKV1OR2-108 Gene

SuperPathways for IGKV1OR2-108 Gene

No Data Available

Interacting Proteins for IGKV1OR2-108 Gene

Gene Ontology (GO) - Biological Process for IGKV1OR2-108 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006955 immune response IBA --
genes like me logo Genes that share ontologies with IGKV1OR2-108: view

No data available for Pathways by source and SIGNOR curated interactions for IGKV1OR2-108 Gene

Drugs & Compounds for IGKV1OR2-108 Gene

No Compound Related Data Available

Transcripts for IGKV1OR2-108 Gene

mRNA/cDNA for IGKV1OR2-108 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGKV1OR2-108 Gene

No ASD Table

Relevant External Links for IGKV1OR2-108 Gene

GeneLoc Exon Structure for
IGKV1OR2-108
ECgene alternative splicing isoforms for
IGKV1OR2-108

Expression for IGKV1OR2-108 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGKV1OR2-108 Gene

mRNA differential expression in normal tissues according to GTEx for IGKV1OR2-108 Gene

This gene is overexpressed in Thyroid (x8.3), Skin - Not Sun Exposed (Suprapubic) (x6.4), Spleen (x4.9), and Adrenal Gland (x4.7).
genes like me logo Genes that share expression patterns with IGKV1OR2-108: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGKV1OR2-108 Gene

Orthologs for IGKV1OR2-108 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IGKV1OR2-108 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 58 (a)
OneToMany
Species where no ortholog for IGKV1OR2-108 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGKV1OR2-108 Gene

ENSEMBL:
Gene Tree for IGKV1OR2-108 (if available)
TreeFam:
Gene Tree for IGKV1OR2-108 (if available)

Paralogs for IGKV1OR2-108 Gene

Pseudogenes.org Pseudogenes for IGKV1OR2-108 Gene

genes like me logo Genes that share paralogs with IGKV1OR2-108: view

Variants for IGKV1OR2-108 Gene

Additional Variant Information for IGKV1OR2-108 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGKV1OR2-108

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGKV1OR2-108 Gene

Disorders for IGKV1OR2-108 Gene

No disorders were found for IGKV1OR2-108 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGKV1OR2-108 Gene

Publications for IGKV1OR2-108 Gene

  1. A human immunoglobulin kappa orphon without sequence defects may be the product of a pericentric inversion. (PMID: 2114012) Huber C … Zachau HG (Nucleic acids research 1990) 2 3 58
  2. Characterization of an in vivo reactivation model of herpes simplex virus from mice trigeminal ganglia. (PMID: 8245867) Birmanns B … Steiner I (The Journal of general virology 1993) 22 58

Products for IGKV1OR2-108 Gene

Sources for IGKV1OR2-108 Gene

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