Aliases for IGHVIII-2-1 Gene

Aliases for IGHVIII-2-1 Gene

  • Immunoglobulin Heavy Variable (III)-2-1 (Pseudogene) 2 3 5
  • IGHV(III)-2-1 2 3
  • Immunoglobulin Heavy Variable (III)-2-1 Pseudogene 2
  • Immunoglobulin Heavy Variable (III)-2-1 2
  • IGHVIII-2-1 5
  • IGHVIII21 3
  • 3-02.1P 3

External Ids for IGHVIII-2-1 Gene

Previous GeneCards Identifiers for IGHVIII-2-1 Gene

  • GC14U990112
  • GC14M104439
  • GC14M105538
  • GC14M106468
  • GC14M086601
  • GC14M106530
  • GC14M106752
  • GC14M107404
  • GC14M107596

Summaries for IGHVIII-2-1 Gene

GeneCards Summary for IGHVIII-2-1 Gene

IGHVIII-2-1 (Immunoglobulin Heavy Variable (III)-2-1 (Pseudogene)) is a Pseudogene.

Additional gene information for IGHVIII-2-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IGHVIII-2-1 Gene

Genomics for IGHVIII-2-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IGHVIII-2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J106002 Enhancer 0.3 dbSUPER 600.7 -1.7 -1672 1.4 MNT IGHVIII-2-1 lnc-BRF1-15 IGHV1-3 IGHV1-2 lnc-TMEM121-2 NONHSAG016150.2 lnc-BRF1-42 COPDA1 lnc-BRF1-23 IGH
GH14J106001 Enhancer 0.3 Ensembl 600.7 +0.1 135 1 CTCF IGHVIII-2-1 lnc-BRF1-15 IGHV1-3 IGHV1-2 NONHSAG016150.2 lnc-TMEM121-2 lnc-BRF1-42 COPDA1 lnc-BRF1-23 IGH
GH14J106004 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -3.6 -3562 1.8 PRDM10 REST CTCF POLR2A MGA SMARCA5 ZNF444 ZBTB17 MYC RAD21 IGHV1-3 LOC107984634 IGHVIII-2-1 IGHV1-2 lnc-TMEM121-2 NONHSAG016150.2 IGH lnc-BRF1-42 COPDA1 lnc-BRF1-23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGHVIII-2-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IGHVIII-2-1 Gene

Genomic Locations for IGHVIII-2-1 Gene
chr14:106,001,534-106,001,835
(GRCh38/hg38)
Size:
302 bases
Orientation:
Minus strand
chr14:106,467,677-106,467,978
(GRCh37/hg19)
Size:
302 bases
Orientation:
Minus strand

Genomic View for IGHVIII-2-1 Gene

Genes around IGHVIII-2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHVIII-2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHVIII-2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHVIII-2-1 Gene

Proteins for IGHVIII-2-1 Gene

Post-translational modifications for IGHVIII-2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGHVIII-2-1 Gene

Domains & Families for IGHVIII-2-1 Gene

Gene Families for IGHVIII-2-1 Gene

genes like me logo Genes that share domains with IGHVIII-2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IGHVIII-2-1 Gene

Function for IGHVIII-2-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHVIII-2-1 Gene

Localization for IGHVIII-2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGHVIII-2-1 Gene

Pathways & Interactions for IGHVIII-2-1 Gene

PathCards logo

SuperPathways for IGHVIII-2-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IGHVIII-2-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IGHVIII-2-1 Gene

Drugs & Compounds for IGHVIII-2-1 Gene

No Compound Related Data Available

Transcripts for IGHVIII-2-1 Gene

mRNA/cDNA for IGHVIII-2-1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGHVIII-2-1 Gene

No ASD Table

Relevant External Links for IGHVIII-2-1 Gene

GeneLoc Exon Structure for
IGHVIII-2-1

Expression for IGHVIII-2-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IGHVIII-2-1 Gene

genes like me logo Genes that share expression patterns with IGHVIII-2-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHVIII-2-1 Gene

Orthologs for IGHVIII-2-1 Gene

Evolution for IGHVIII-2-1 Gene

ENSEMBL:
Gene Tree for IGHVIII-2-1 (if available)
TreeFam:
Gene Tree for IGHVIII-2-1 (if available)

No data available for Orthologs for IGHVIII-2-1 Gene

Paralogs for IGHVIII-2-1 Gene

No data available for Paralogs for IGHVIII-2-1 Gene

Variants for IGHVIII-2-1 Gene

Additional Variant Information for IGHVIII-2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHVIII-2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHVIII-2-1 Gene

Disorders for IGHVIII-2-1 Gene

No disorders were found for IGHVIII-2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGHVIII-2-1 Gene

Publications for IGHVIII-2-1 Gene

  1. The complete nucleotide sequence of the human immunoglobulin heavy chain variable region locus. (PMID: 9841928) Matsuda F … Honjo T (The Journal of experimental medicine 1998) 3

Products for IGHVIII-2-1 Gene

Sources for IGHVIII-2-1 Gene