Aliases for IGHV3OR16-17 Gene

Aliases for IGHV3OR16-17 Gene

  • Immunoglobulin Heavy Variable 3/OR16-17 (Non-Functional) 2 3 5
  • IGHV3/OR16-17 2 3
  • Immunoglobulin Heavy Chain Variable Region 3
  • Ig-Like Domain-Containing Protein 13
  • IGHV3OR16-17 5

External Ids for IGHV3OR16-17 Gene

Previous GeneCards Identifiers for IGHV3OR16-17 Gene

  • GC16M033863

Summaries for IGHV3OR16-17 Gene

GeneCards Summary for IGHV3OR16-17 Gene

IGHV3OR16-17 (Immunoglobulin Heavy Variable 3/OR16-17 (Non-Functional)) is a Protein Coding gene. An important paralog of this gene is IGHV3OR16-8.

Additional gene information for IGHV3OR16-17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IGHV3OR16-17 Gene

Genomics for IGHV3OR16-17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IGHV3OR16-17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J033707 Enhancer 0.7 FANTOM5 0.1 +138.0 137997 0.1 SUPT5H SMARCA4 EGR1 NRF1 L3MBTL2 MEIS2 PHF20 CTCF ZNF24 RNF2 BMS1P8 HSALNG0111014 piR-59382-005 piR-55364-007 lnc-TP53TG3F-10 IGHV3OR16-17 TP53TG3F LOC105369266
GH16J033771 Promoter 0.3 Ensembl 0.2 +74.1 74073 0.4 ENPP7P13 ENSG00000260308 lnc-TP53TG3F-13 lnc-TP53TG3F-14 piR-39371 piR-37804-009 ENSG00000261466 HSALNG0111016 IGHV3OR16-17 LOC105369266
GH16J033655 Enhancer 0.5 ENCODE 0.1 +188.8 188835 0.1 ZNF654 REST TRIM22 SMARCA5 SKIL RAD21 CTCF RFX1 piR-40110-238 piR-48810-004 IGHV3OR16-17 TP53TG3F LOC105369266
GH16J033646 Enhancer 0.4 Ensembl 0.1 +198.7 198674 0.4 SMARCE1 ATF3 FOS MTA1 piR-48890-001 piR-61942-002 TP53TG3F IGHV3OR16-17 LOC105369266
GH16J033920 Enhancer 0.2 Ensembl 0.2 -75.7 -75736 0.4 piR-36428-003 piR-35871-003 ARHGAP23P1 IGHV3OR16-17 LOC105369266 LOC102724485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGHV3OR16-17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IGHV3OR16-17 Gene

Latest Assembly
chr16:33,844,758-33,845,274
(GRCh38/hg38)
Size:
517 bases
Orientation:
Minus strand

Previous Assembly
chr16:33,647,044-33,647,696
(GRCh37/hg19 by Ensembl)
Size:
653 bases
Orientation:
Minus strand

Genomic View for IGHV3OR16-17 Gene

Genes around IGHV3OR16-17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV3OR16-17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV3OR16-17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV3OR16-17 Gene

Proteins for IGHV3OR16-17 Gene

  • Protein details for IGHV3OR16-17 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    S4R3C0-S4R3C0_HUMAN
    Recommended name:
    Ig-like domain-containing protein
    Protein Accession:
    S4R3C0

    Protein attributes for IGHV3OR16-17 Gene

    Size:
    116 amino acids
    Molecular mass:
    12761 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGHV3OR16-17 Gene

Post-translational modifications for IGHV3OR16-17 Gene

No Post-translational modifications

Other Protein References for IGHV3OR16-17 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGHV3OR16-17 Gene

Domains & Families for IGHV3OR16-17 Gene

Gene Families for IGHV3OR16-17 Gene

Protein Domains for IGHV3OR16-17 Gene

genes like me logo Genes that share domains with IGHV3OR16-17: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IGHV3OR16-17 Gene

Function for IGHV3OR16-17 Gene

Gene Ontology (GO) - Molecular Function for IGHV3OR16-17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003823 antigen binding IBA --
GO:0034987 immunoglobulin receptor binding IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-17: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV3OR16-17 Gene

Localization for IGHV3OR16-17 Gene

Gene Ontology (GO) - Cellular Components for IGHV3OR16-17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009897 external side of plasma membrane IBA --
GO:0042571 immunoglobulin complex, circulating IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-17: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGHV3OR16-17 Gene

Pathways & Interactions for IGHV3OR16-17 Gene

PathCards logo

SuperPathways for IGHV3OR16-17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IGHV3OR16-17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006910 phagocytosis, recognition IBA --
GO:0006911 phagocytosis, engulfment IBA --
GO:0006958 complement activation, classical pathway IBA --
GO:0042742 defense response to bacterium IBA --
GO:0045087 innate immune response IBA --
genes like me logo Genes that share ontologies with IGHV3OR16-17: view

No data available for Pathways by source and SIGNOR curated interactions for IGHV3OR16-17 Gene

Drugs & Compounds for IGHV3OR16-17 Gene

No Compound Related Data Available

Transcripts for IGHV3OR16-17 Gene

mRNA/cDNA for IGHV3OR16-17 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV3OR16-17 Gene

No ASD Table

Relevant External Links for IGHV3OR16-17 Gene

GeneLoc Exon Structure for
IGHV3OR16-17

Expression for IGHV3OR16-17 Gene

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHV3OR16-17 Gene

Orthologs for IGHV3OR16-17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGHV3OR16-17 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
Mammalia -- 30
  • 76 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii -- 29
Rainbow Trout
(Oncorhynchus mykiss)
Actinopterygii Omy.11805 29
Species where no ortholog for IGHV3OR16-17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for IGHV3OR16-17 Gene

ENSEMBL:
Gene Tree for IGHV3OR16-17 (if available)
TreeFam:
Gene Tree for IGHV3OR16-17 (if available)
Alliance of Genome Resources:
Additional Orthologs for IGHV3OR16-17

Paralogs for IGHV3OR16-17 Gene

genes like me logo Genes that share paralogs with IGHV3OR16-17: view

Variants for IGHV3OR16-17 Gene

Additional Variant Information for IGHV3OR16-17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV3OR16-17
Leiden Open Variation Database (LOVD)
IGHV3OR16-17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV3OR16-17 Gene

Disorders for IGHV3OR16-17 Gene

Additional Disease Information for IGHV3OR16-17

Open Targets Platform
Open Targets Platform

No disorders were found for IGHV3OR16-17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGHV3OR16-17 Gene

Publications for IGHV3OR16-17 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 13

No data available for Mastermind for IGHV3OR16-17 Gene

Products for IGHV3OR16-17 Gene

Sources for IGHV3OR16-17 Gene