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Aliases for IGHV3-47 Gene

Aliases for IGHV3-47 Gene

  • Immunoglobulin Heavy Variable 3-47 (Pseudogene) 2 3 5
  • Immunoglobulin Heavy Variable 3-47 Pseudogene 2
  • Immunoglobulin Heavy Variable 3-47 2
  • IGHV347 3
  • 3-47P 3

External Ids for IGHV3-47 Gene

Previous GeneCards Identifiers for IGHV3-47 Gene

  • GC14U990181
  • GC14M104946
  • GC14M106046
  • GC14M106047
  • GC14M106975
  • GC14M106978
  • GC14M107000
  • GC14M107474
  • GC14M107666
  • GC14M106571
  • GC14M107045
  • GC14M107769
  • GC14M107862
  • GC14M107961
  • GC14M108083
  • GC14M108224

Summaries for IGHV3-47 Gene

GeneCards Summary for IGHV3-47 Gene

IGHV3-47 (Immunoglobulin Heavy Variable 3-47 (Pseudogene)) is a Pseudogene.

Additional gene information for IGHV3-47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGHV3-47 Gene

Genomics for IGHV3-47 Gene

GeneHancer (GH) Regulatory Elements for IGHV3-47 Gene

Promoters and enhancers for IGHV3-47 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I106517 Enhancer 0.8 ENCODE dbSUPER 550.8 +0.6 634 1.3 SMARCA5 CTCF RB1 CEBPB TRIM22 EBF1 CEBPG RAD21 IKZF1 ZNF143 IGHV3-47 IGHVII-46-1 LINC00221 IGH
GH14I106531 Enhancer 0.8 ENCODE dbSUPER 0.4 -12.0 -11962 0.1 CTCF RB1 TRIM22 EBF1 RAD21 KLF5 IKZF1 NBN ZNF143 RLF IGHVIII-47-1 IGHV3-47 IGH
GH14I106530 Enhancer 0.6 ENCODE 0.4 -11.6 -11630 0.1 SMARCA5 CTCF RB1 TRIM22 ELF1 RAD21 IKZF1 NBN ZNF143 RLF IGHVIII-47-1 IGHV3-47 IGH
GH14I106520 Enhancer 0.5 dbSUPER 0.4 -5.1 -5050 7.7 ZNF680 CREB1 EBF1 ATF7 ATF2 IGHV3-53 IGHVIII-47-1 IGHV3-47 LINC00221 IGH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGHV3-47 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGHV3-47 Gene

Genomic Locations for IGHV3-47 Gene
chr14:106,518,579-106,519,034
(GRCh38/hg38)
Size:
456 bases
Orientation:
Minus strand
chr14:106,974,506-106,974,961
(GRCh37/hg19)

Genomic View for IGHV3-47 Gene

Genes around IGHV3-47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV3-47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV3-47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV3-47 Gene

Proteins for IGHV3-47 Gene

Post-translational modifications for IGHV3-47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGHV3-47 Gene

Domains & Families for IGHV3-47 Gene

Gene Families for IGHV3-47 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGHV3-47: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGHV3-47 Gene

Function for IGHV3-47 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV3-47 Gene

Localization for IGHV3-47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGHV3-47 Gene

Pathways & Interactions for IGHV3-47 Gene

SuperPathways for IGHV3-47 Gene

No Data Available

Interacting Proteins for IGHV3-47 Gene

Gene Ontology (GO) - Biological Process for IGHV3-47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGHV3-47 Gene

Drugs & Compounds for IGHV3-47 Gene

No Compound Related Data Available

Transcripts for IGHV3-47 Gene

mRNA/cDNA for IGHV3-47 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV3-47 Gene

No ASD Table

Relevant External Links for IGHV3-47 Gene

GeneLoc Exon Structure for
IGHV3-47
ECgene alternative splicing isoforms for
IGHV3-47

Expression for IGHV3-47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGHV3-47 Gene

mRNA differential expression in normal tissues according to GTEx for IGHV3-47 Gene

This gene is overexpressed in Testis (x36.2), Colon - Transverse (x8.4), and Spleen (x8.3).
genes like me logo Genes that share expression patterns with IGHV3-47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHV3-47 Gene

Orthologs for IGHV3-47 Gene

Evolution for IGHV3-47 Gene

ENSEMBL:
Gene Tree for IGHV3-47 (if available)
TreeFam:
Gene Tree for IGHV3-47 (if available)

No data available for Orthologs for IGHV3-47 Gene

Paralogs for IGHV3-47 Gene

No data available for Paralogs for IGHV3-47 Gene

Variants for IGHV3-47 Gene

Additional Variant Information for IGHV3-47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV3-47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV3-47 Gene

Disorders for IGHV3-47 Gene

No disorders were found for IGHV3-47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGHV3-47 Gene

Publications for IGHV3-47 Gene

  1. Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting. (PMID: 19023113) Longo NS … Lipsky PE (Blood 2009) 3 58
  2. Origin of nodular lymphocyte-predominant Hodgkin's disease from a clonal expansion of highly mutated germinal-center B cells. (PMID: 9250847) Marafioti T … Stein H (The New England journal of medicine 1997) 3 58
  3. The repertoire of human germline VH sequences reveals about fifty groups of VH segments with different hypervariable loops. (PMID: 1404388) Tomlinson IM … Winter G (Journal of molecular biology 1992) 3 58

Products for IGHV3-47 Gene

Sources for IGHV3-47 Gene

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