Aliases for IGHV2OR16-5 Gene

Aliases for IGHV2OR16-5 Gene

  • Immunoglobulin Heavy Variable 2/OR16-5 (Non-Functional) 2 3 5 13
  • IGHV2/OR16-5 2 3
  • Immunoglobulin Heavy Variable 2/OR16-5 2
  • IGHV2OR16-5 5
  • IGHV2OR165 3

External Ids for IGHV2OR16-5 Gene

Previous GeneCards Identifiers for IGHV2OR16-5 Gene

  • GC16U990117
  • GC16P032769

Summaries for IGHV2OR16-5 Gene

GeneCards Summary for IGHV2OR16-5 Gene

IGHV2OR16-5 (Immunoglobulin Heavy Variable 2/OR16-5 (Non-Functional)) is a Pseudogene. An important paralog of this gene is IGHV2-26.

Additional gene information for IGHV2OR16-5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IGHV2OR16-5 Gene

Genomics for IGHV2OR16-5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IGHV2OR16-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J032846 Enhancer 0.2 Ensembl 250.7 +0.3 288 0.4 ENSG00000259934 IGHV2OR16-5 lnc-TP53TG3-13 piR-33753-002 lnc-TP53TG3C-15 IGHV3OR16-8 TP53TG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGHV2OR16-5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IGHV2OR16-5 Gene

Latest Assembly
chr16:32,847,713-32,848,254
(GRCh38/hg38)
Size:
542 bases
Orientation:
Plus strand

Previous Assembly
chr16:32,859,034-32,859,575
(GRCh37/hg19 by Entrez Gene)
Size:
542 bases
Orientation:
Plus strand

chr16:32,859,034-32,859,477
(GRCh37/hg19 by Ensembl)
Size:
444 bases
Orientation:
Plus strand

Genomic View for IGHV2OR16-5 Gene

Genes around IGHV2OR16-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGHV2OR16-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGHV2OR16-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGHV2OR16-5 Gene

Proteins for IGHV2OR16-5 Gene

  • Protein details for IGHV2OR16-5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J2B6-A0A0B4J2B6_HUMAN
    Recommended name:
    Immunoglobulin heavy variable 2/OR16-5 (non-functional)
    Protein Accession:
    A0A0B4J2B6

    Protein attributes for IGHV2OR16-5 Gene

    Size:
    119 amino acids
    Molecular mass:
    13199 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGHV2OR16-5 Gene

Post-translational modifications for IGHV2OR16-5 Gene

No Post-translational modifications

Other Protein References for IGHV2OR16-5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for IGHV2OR16-5 Gene

Domains & Families for IGHV2OR16-5 Gene

Gene Families for IGHV2OR16-5 Gene

Protein Domains for IGHV2OR16-5 Gene

genes like me logo Genes that share domains with IGHV2OR16-5: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IGHV2OR16-5 Gene

Function for IGHV2OR16-5 Gene

Phenotypes From GWAS Catalog for IGHV2OR16-5 Gene

Gene Ontology (GO) - Molecular Function for IGHV2OR16-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003823 antigen binding IBA --
GO:0034987 immunoglobulin receptor binding IBA --
genes like me logo Genes that share ontologies with IGHV2OR16-5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGHV2OR16-5 Gene

Localization for IGHV2OR16-5 Gene

Gene Ontology (GO) - Cellular Components for IGHV2OR16-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009897 external side of plasma membrane IBA --
GO:0042571 immunoglobulin complex, circulating IBA --
genes like me logo Genes that share ontologies with IGHV2OR16-5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for IGHV2OR16-5 Gene

Pathways & Interactions for IGHV2OR16-5 Gene

PathCards logo

SuperPathways for IGHV2OR16-5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IGHV2OR16-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006910 phagocytosis, recognition IBA --
GO:0006911 phagocytosis, engulfment IBA --
GO:0006958 complement activation, classical pathway IBA --
GO:0042742 defense response to bacterium IBA --
GO:0045087 innate immune response IBA --
genes like me logo Genes that share ontologies with IGHV2OR16-5: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IGHV2OR16-5 Gene

Drugs & Compounds for IGHV2OR16-5 Gene

No Compound Related Data Available

Transcripts for IGHV2OR16-5 Gene

mRNA/cDNA for IGHV2OR16-5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for IGHV2OR16-5 Gene

No ASD Table

Relevant External Links for IGHV2OR16-5 Gene

GeneLoc Exon Structure for
IGHV2OR16-5

Expression for IGHV2OR16-5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IGHV2OR16-5 Gene

genes like me logo Genes that share expression patterns with IGHV2OR16-5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGHV2OR16-5 Gene

Orthologs for IGHV2OR16-5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for IGHV2OR16-5 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 99 (a)
OneToMany
-- 30
  • 98 (a)
OneToMany
-- 30
  • 98 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 30
  • 46 (a)
OneToMany
Chicken
(Gallus gallus)
Aves -- 30
  • 26 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 30
  • 51 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii ighv5-5 30
  • 38 (a)
ManyToMany
ighv5-7 30
  • 38 (a)
ManyToMany
ighv5-1 30
  • 38 (a)
ManyToMany
ighv5-4 30
  • 37 (a)
ManyToMany
ighv5-3 30
  • 37 (a)
ManyToMany
ighv5-2 30
  • 37 (a)
ManyToMany
ighv8-2 30
  • 37 (a)
ManyToMany
ighv8-4 30
  • 37 (a)
ManyToMany
ighv8-3 30
  • 36 (a)
ManyToMany
ighv5-8 30
  • 36 (a)
ManyToMany
ighv8-1 30
  • 34 (a)
ManyToMany
ighv7-1 30
  • 33 (a)
ManyToMany
Species where no ortholog for IGHV2OR16-5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for IGHV2OR16-5 Gene

ENSEMBL:
Gene Tree for IGHV2OR16-5 (if available)
TreeFam:
Gene Tree for IGHV2OR16-5 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for IGHV2OR16-5: view image
Alliance of Genome Resources:
Additional Orthologs for IGHV2OR16-5

Paralogs for IGHV2OR16-5 Gene

Pseudogenes.org Pseudogenes for IGHV2OR16-5 Gene

genes like me logo Genes that share paralogs with IGHV2OR16-5: view

Variants for IGHV2OR16-5 Gene

Additional Variant Information for IGHV2OR16-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGHV2OR16-5
Leiden Open Variation Database (LOVD)
IGHV2OR16-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGHV2OR16-5 Gene

Disorders for IGHV2OR16-5 Gene

No disorders were found for IGHV2OR16-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for IGHV2OR16-5 Gene

Publications for IGHV2OR16-5 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 13
  2. Recent translocation of variable and diversity segments of the human immunoglobulin heavy chain from chromosome 14 to chromosomes 15 and 16. (PMID: 7959766) Nagaoka H … Anand R (Genomics 1994) 3

Products for IGHV2OR16-5 Gene

Sources for IGHV2OR16-5 Gene