Aliases for IGFL2-AS1 Gene

Subcategory (RNA class) for IGFL2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for IGFL2-AS1 Gene

  • IGFL2 Antisense RNA 1 2 3 5
  • IGFL2-AS1 2 5 165
  • NONHSAG026072.2 91
  • HSALNG0126654 164

External Ids for IGFL2-AS1 Gene

Summaries for IGFL2-AS1 Gene

GeneCards Summary for IGFL2-AS1 Gene

IGFL2-AS1 (IGFL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IGFL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IGFL2-AS1 Gene

Genomics for IGFL2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IGFL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046200 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 611 +0.5 509 4 TEAD4 ZNF512 JUND PKNOX1 ZNF24 HDAC1 SOX6 TCF12 EP300 MGA ENSG00000268460 IGFL2-AS1 IGFL1 IGFL2 HIF3A IGFL3
GH19J046208 Enhancer 1.2 Ensembl ENCODE dbSUPER 8.4 -7.5 -7540 5.8 CREB1 TEAD4 ZNF629 TARDBP ZNF300 PRDM1 ATF7 SP1 EGR1 CTBP1 LOC93429 piR-31292-082 ENSG00000268460 ZC3H4 ENSG00000269124 ERCC2 ENSG00000268810 CCDC61 PPP5C IGFL2-AS1
GH19J046205 Enhancer 1 Ensembl ENCODE dbSUPER 8.6 -3.2 -3232 2 TEAD4 MNT MGA ZNF766 NR3C1 NFRKB MYC MAZ ZFHX2 TFDP1 ENSG00000268460 IGFL1 IGFL2-AS1 RPL12P41 LOC93429 IGFL3 IGFL2
GH19J046197 Enhancer 0.8 Ensembl ENCODE dbSUPER 9.1 +4.4 4360 2.8 SP1 ATF3 NR3C1 FOSL2 ZBTB33 NR4A1 MLLT1 ENSG00000268460 IGFL1 IGFL2-AS1 IGFL1P1 IGFL3 IGFL2
GH19J046242 Enhancer 0.4 Ensembl 8.6 -37.1 -37141 0.6 SCRT2 SP1 RNF2 lnc-IGFL1-2 CCDC61 NOVA2 IGFL2-AS1 ENSG00000269745 HSALNG0126659 IGFL1 HIF3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGFL2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IGFL2-AS1 Gene

Genomic Locations for IGFL2-AS1 Gene
chr19:46,189,029-46,203,160
(GRCh38/hg38)
Size:
14,132 bases
Orientation:
Minus strand
chr19:46,692,423-46,706,340
(GRCh37/hg19)
Size:
13,918 bases
Orientation:
Minus strand

Genomic View for IGFL2-AS1 Gene

Genes around IGFL2-AS1 on UCSC Golden Path with GeneCards custom track
IGFL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
IGFL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGFL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGFL2-AS1 Gene

Proteins for IGFL2-AS1 Gene

Post-translational modifications for IGFL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGFL2-AS1 Gene

Domains & Families for IGFL2-AS1 Gene

Gene Families for IGFL2-AS1 Gene

genes like me logo Genes that share domains with IGFL2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IGFL2-AS1 Gene

Function for IGFL2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGFL2-AS1 Gene

Localization for IGFL2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGFL2-AS1 Gene

Pathways & Interactions for IGFL2-AS1 Gene

PathCards logo

SuperPathways for IGFL2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IGFL2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IGFL2-AS1 Gene

Drugs & Compounds for IGFL2-AS1 Gene

No Compound Related Data Available

Transcripts for IGFL2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for IGFL2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C958B_9606 lncRNA 470 4

Ensembl: ENST00000598754 (view in UCSC) ,

LncBook: HSALNT0260811,

LNCipedia: IGFL2-AS1:15,

NONCODE: NONHSAT066860.2,

URS00003AD5AB_9606 lncRNA 446 4

Ensembl: ENST00000601263 (view in UCSC) ,

LncBook: HSALNT0260812,

LNCipedia: IGFL2-AS1:16,

NONCODE: NONHSAT066861.2,

URS000047B1D7_9606 lncRNA 304 4

Ensembl: ENST00000595673 (view in UCSC) ,

LncBook: HSALNT0260813,

LNCipedia: IGFL2-AS1:11,

NONCODE: NONHSAT066862.2,

URS0000A76D1B_9606 lncRNA 1644 2

HGNC: 52559,

RefSeq: NR_135234,

URS0000EECFEA_9606 lncRNA 1665 1

Ensembl: ENST00000666136 (view in UCSC) ,

IGFL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for IGFL2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for IGFL2-AS1 Gene

No ASD Table

Relevant External Links for IGFL2-AS1 Gene

GeneLoc Exon Structure for
IGFL2-AS1

Expression for IGFL2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IGFL2-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGFL2-AS1 Gene

Orthologs for IGFL2-AS1 Gene

Evolution for IGFL2-AS1 Gene

ENSEMBL:
Gene Tree for IGFL2-AS1 (if available)
TreeFam:
Gene Tree for IGFL2-AS1 (if available)

No data available for Orthologs for IGFL2-AS1 Gene

Paralogs for IGFL2-AS1 Gene

No data available for Paralogs for IGFL2-AS1 Gene

Variants for IGFL2-AS1 Gene

Additional dbSNP identifiers (rs#s) for IGFL2-AS1 Gene

Additional Variant Information for IGFL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGFL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IGFL2-AS1 Gene

Disorders for IGFL2-AS1 Gene

No disorders were found for IGFL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGFL2-AS1 Gene

Publications for IGFL2-AS1 Gene

  1. LncRNA IGFL2-AS1 functions as a ceRNA in regulating ARPP19 through competitive binding to miR-802 in gastric cancer. (PMID: 31943339) Ma Y … Wang JH (Molecular carcinogenesis 2020) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for IGFL2-AS1 Gene

Sources for IGFL2-AS1 Gene