Aliases for IGF2BP2-AS1 Gene

Subcategory (RNA class) for IGF2BP2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for IGF2BP2-AS1 Gene

  • IGF2BP2 Antisense RNA 1 2 3 4 5
  • IGF2BP2-AS1 2 168
  • C3orf65 3 4
  • Putative Uncharacterized Protein IGF2BP2-AS1 4
  • Chromosome 3 Open Reading Frame 65 2
  • IGF2BP2 Antisense Gene Protein 1 4
  • HSALNG0031320 167
  • NONHSAG036891 92

External Ids for IGF2BP2-AS1 Gene

Previous HGNC Symbols for IGF2BP2-AS1 Gene

  • C3orf65

Summaries for IGF2BP2-AS1 Gene

GeneCards Summary for IGF2BP2-AS1 Gene

IGF2BP2-AS1 (IGF2BP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with IGF2BP2-AS1 include Lung Cancer Susceptibility 3.

Additional gene information for IGF2BP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IGF2BP2-AS1 Gene

Genomics for IGF2BP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for IGF2BP2-AS1 Gene

Promoters and enhancers for IGF2BP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J185818 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +110.2 110239 8.3 NRF1 POLR2G JUND FOS ZIC2 POLR2A ZBTB10 ZBTB11 ZNF423 AFF1 IGF2BP2 TRA2B RFC4 TBCCD1 SNORA4 IGF2BP2-AS1 lnc-SENP2-2 lnc-TRA2B-2 lnc-SENP2-7
GH03J185795 Enhancer 1.4 VISTA ENCODE dbSUPER 10.7 +84.5 84453 3.4 FOXK2 TCF12 NCOR1 FOS POLR2A FOXA1 RFX1 CUX1 SMARCC2 SKI IGF2BP2 IGF2BP2-AS1 RF00017-4197 lnc-SENP2-7 lnc-TRA2B-2
GH03J185814 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +103.3 103317 2 MYC TAF9B NCOR1 NFRKB CREB3L1 NKRF MAX ZNF592 RBBP5 POLR2H IGF2BP2-AS1 TRA2B IGF2BP2 lnc-TRA2B-2 lnc-SENP2-7
GH03J185687 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.5 -23.7 -23727 3.6 JUND FOS ZIC2 REST EP300 MYNN NFIC CREB3L1 POLR2A FOSL2 IGF2BP2-AS1 IGF2BP2 FJ601684-334 lnc-SENP2-1
GH03J185773 Promoter/Enhancer 1 Ensembl ENCODE 12 +61.5 61476 0.7 ZSCAN5C ZIC2 ZNF341 LEF1 TRIM25 NFIC ZBTB17 TCF7L2 GATA3 ZNF335 IGF2BP2-AS1 IGF2BP2 piR-38580-214 piR-41245-183 lnc-TRA2B-2 lnc-SENP2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGF2BP2-AS1 Gene

Genomic Locations for IGF2BP2-AS1 Gene
chr3:185,712,528-185,729,787
(GRCh38/hg38)
Size:
17,260 bases
Orientation:
Plus strand
chr3:185,430,316-185,447,575
(GRCh37/hg19)
Size:
17,260 bases
Orientation:
Plus strand

Genomic View for IGF2BP2-AS1 Gene

Genes around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGF2BP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGF2BP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGF2BP2-AS1 Gene

Proteins for IGF2BP2-AS1 Gene

  • Protein details for IGF2BP2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M15-IFAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein IGF2BP2-AS1
    Protein Accession:
    Q96M15

    Protein attributes for IGF2BP2-AS1 Gene

    Size:
    143 amino acids
    Molecular mass:
    15995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGF2BP2-AS1 Gene

Post-translational modifications for IGF2BP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGF2BP2-AS1 Gene

Domains & Families for IGF2BP2-AS1 Gene

Protein Domains for IGF2BP2-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with IGF2BP2-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IGF2BP2-AS1 Gene

Function for IGF2BP2-AS1 Gene

Phenotypes From GWAS Catalog for IGF2BP2-AS1 Gene

Phenotypes for IGF2BP2-AS1 Gene

genes like me logo Genes that share phenotypes with IGF2BP2-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for IGF2BP2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGF2BP2-AS1 Gene

Localization for IGF2BP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGF2BP2-AS1 Gene

Pathways & Interactions for IGF2BP2-AS1 Gene

PathCards logo

SuperPathways for IGF2BP2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IGF2BP2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IGF2BP2-AS1 Gene

Drugs & Compounds for IGF2BP2-AS1 Gene

No Compound Related Data Available

Transcripts for IGF2BP2-AS1 Gene

mRNA/cDNA for IGF2BP2-AS1 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
5 LncBook transcripts :
5 LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for IGF2BP2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for IGF2BP2-AS1 Gene

No ASD Table

Relevant External Links for IGF2BP2-AS1 Gene

GeneLoc Exon Structure for
IGF2BP2-AS1

Expression for IGF2BP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IGF2BP2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IGF2BP2-AS1

genes like me logo Genes that share expression patterns with IGF2BP2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGF2BP2-AS1 Gene

Orthologs for IGF2BP2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for IGF2BP2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf65 31
  • 65 (a)
OneToOne
Species where no ortholog for IGF2BP2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGF2BP2-AS1 Gene

ENSEMBL:
Gene Tree for IGF2BP2-AS1 (if available)
TreeFam:
Gene Tree for IGF2BP2-AS1 (if available)

Paralogs for IGF2BP2-AS1 Gene

No data available for Paralogs for IGF2BP2-AS1 Gene

Variants for IGF2BP2-AS1 Gene

Additional dbSNP identifiers (rs#s) for IGF2BP2-AS1 Gene

Variation tolerance for IGF2BP2-AS1 Gene

Gene Damage Index Score: 0.50; 10.82% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for IGF2BP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGF2BP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Structural Variations from Database of Genomic Variants (DGV) for IGF2BP2-AS1 Gene

Disorders for IGF2BP2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for IGF2BP2-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for IGF2BP2-AS1

genes like me logo Genes that share disorders with IGF2BP2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IGF2BP2-AS1 Gene

Publications for IGF2BP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 4 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for IGF2BP2-AS1 Gene

Sources for IGF2BP2-AS1 Gene