Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IGF2BP2-AS1 Gene

Subcategory (RNA class) for IGF2BP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for IGF2BP2-AS1 Gene

  • IGF2BP2 Antisense RNA 1 2 3 4 5
  • C3orf65 3 4
  • Chromosome 3 Open Reading Frame 65 2
  • IGF2BP2 Antisense Gene Protein 1 4

External Ids for IGF2BP2-AS1 Gene

Previous HGNC Symbols for IGF2BP2-AS1 Gene

  • C3orf65

Summaries for IGF2BP2-AS1 Gene

GeneCards Summary for IGF2BP2-AS1 Gene

IGF2BP2-AS1 (IGF2BP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for IGF2BP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IGF2BP2-AS1 Gene

Genomics for IGF2BP2-AS1 Gene

GeneHancer (GH) Regulatory Elements for IGF2BP2-AS1 Gene

Promoters and enhancers for IGF2BP2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I185711 Enhancer 0.8 Ensembl ENCODE dbSUPER 550.8 -0.8 -758 1 SCRT2 PRDM1 ZNF18 IGF2BP2-AS1 PIR53085 IGF2BP2
GH03I185712 Enhancer 0.8 ENCODE dbSUPER 550.8 +0.6 562 1.4 ZSCAN4 ZNF316 HNF1A HNF4G HNF4A NR2F6 EMSY MAFK ZNF18 MIXL1 IGF2BP2-AS1 VPS8 MIR548AQ IGF2BP2
GH03I185819 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10 +110.7 110744 7.3 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF766 FOS KLF13 SP3 SP5 IGF2BP2 IGF2BP2-AS1 MIR548AQ
GH03I185744 Enhancer 1.3 VISTA Ensembl ENCODE dbSUPER 11.5 +33.4 33432 3.2 SAP130 ZFP64 RARA TCF12 ZFHX2 EGR1 SCRT2 ETV6 NR2F6 FOS IGF2BP2-AS1 VPS8 MIR548AQ IGF2BP2
GH03I185795 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +84.5 84453 3.4 PKNOX1 FOXA2 ARNT ARID4B FOS NFIL3 MAFF SMARCA4 GLIS1 RCOR2 IGF2BP2 IGF2BP2-AS1 MIR548AQ
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IGF2BP2-AS1 Gene

Genomic Locations for IGF2BP2-AS1 Gene
chr3:185,712,528-185,729,787
(GRCh38/hg38)
Size:
17,260 bases
Orientation:
Plus strand
chr3:185,430,316-185,447,575
(GRCh37/hg19)

Genomic View for IGF2BP2-AS1 Gene

Genes around IGF2BP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IGF2BP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IGF2BP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IGF2BP2-AS1 Gene

Proteins for IGF2BP2-AS1 Gene

  • Protein details for IGF2BP2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M15-IFAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein IGF2BP2-AS1
    Protein Accession:
    Q96M15

    Protein attributes for IGF2BP2-AS1 Gene

    Size:
    143 amino acids
    Molecular mass:
    15995 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IGF2BP2-AS1 Gene

Post-translational modifications for IGF2BP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IGF2BP2-AS1 Gene

Domains & Families for IGF2BP2-AS1 Gene

Protein Domains for IGF2BP2-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IGF2BP2-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IGF2BP2-AS1 Gene

Function for IGF2BP2-AS1 Gene

Phenotypes From GWAS Catalog for IGF2BP2-AS1 Gene

Phenotypes for IGF2BP2-AS1 Gene

GenomeRNAi human phenotypes for IGF2BP2-AS1:
genes like me logo Genes that share phenotypes with IGF2BP2-AS1: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IGF2BP2-AS1 Gene

Localization for IGF2BP2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IGF2BP2-AS1 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IGF2BP2-AS1 Gene

Pathways & Interactions for IGF2BP2-AS1 Gene

SuperPathways for IGF2BP2-AS1 Gene

No Data Available

Interacting Proteins for IGF2BP2-AS1 Gene

Gene Ontology (GO) - Biological Process for IGF2BP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IGF2BP2-AS1 Gene

Drugs & Compounds for IGF2BP2-AS1 Gene

No Compound Related Data Available

Transcripts for IGF2BP2-AS1 Gene

mRNA/cDNA for IGF2BP2-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for IGF2BP2-AS1 Gene

No ASD Table

Relevant External Links for IGF2BP2-AS1 Gene

GeneLoc Exon Structure for
IGF2BP2-AS1
ECgene alternative splicing isoforms for
IGF2BP2-AS1

Expression for IGF2BP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IGF2BP2-AS1 Gene

genes like me logo Genes that share expression patterns with IGF2BP2-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IGF2BP2-AS1 Gene

Orthologs for IGF2BP2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for IGF2BP2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf65 34
  • 65 (a)
OneToOne
Species where no ortholog for IGF2BP2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IGF2BP2-AS1 Gene

ENSEMBL:
Gene Tree for IGF2BP2-AS1 (if available)
TreeFam:
Gene Tree for IGF2BP2-AS1 (if available)

Paralogs for IGF2BP2-AS1 Gene

No data available for Paralogs for IGF2BP2-AS1 Gene

Variants for IGF2BP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for IGF2BP2-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000096400 -- 185,727,237(+) A/C intron_variant
rs1000357337 -- 185,729,852(+) G/A downstream_transcript_variant
rs1000567804 -- 185,724,444(+) G/A non_coding_transcript_variant
rs1000576268 -- 185,730,092(+) C/T downstream_transcript_variant
rs1000756828 -- 185,718,044(+) T/C intron_variant

Variation tolerance for IGF2BP2-AS1 Gene

Gene Damage Index Score: 0.50; 10.82% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for IGF2BP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IGF2BP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for IGF2BP2-AS1 Gene

Disorders for IGF2BP2-AS1 Gene

Additional Disease Information for IGF2BP2-AS1

No disorders were found for IGF2BP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IGF2BP2-AS1 Gene

Publications for IGF2BP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for IGF2BP2-AS1 Gene

Sources for IGF2BP2-AS1 Gene

Content
Loading form....