Aliases for IFNG-AS1 Gene

Subcategory (RNA class) for IFNG-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for IFNG-AS1 Gene

  • IFNG Antisense RNA 1 2 3 5
  • IFNG-AS1 2 5 165
  • Theiler'S Murine Encephalomyelitis Virus Persistence Candidate Gene 1 2 3
  • IFNG Antisense RNA 1 (Non-Protein Coding) 2 3
  • LincR-Ifng-3'AS 2 3
  • Tmevpg1 2 3
  • NEST 2 3
  • NONHSAG011599.2 91
  • HSALNG0092137 164
  • GS1-410F4.2 3

External Ids for IFNG-AS1 Gene

Previous GeneCards Identifiers for IFNG-AS1 Gene

  • GC12P068384

Summaries for IFNG-AS1 Gene

GeneCards Summary for IFNG-AS1 Gene

IFNG-AS1 (IFNG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with IFNG-AS1 include Ulcerative Colitis and Sjogren Syndrome.

Additional gene information for IFNG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IFNG-AS1 Gene

Genomics for IFNG-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IFNG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067988 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 617.4 +1.5 1533 5 SP1 FOXA1 RELA TCF12 IKZF2 POLR2A PKNOX1 EED ARID3A RELB IFNG-AS1 LINC01479 IFNG IL22 DYRK2 RPL39P28 LOC107984526
GH12J068011 Enhancer 0.5 Ensembl 36.3 +22.8 22819 2.8 ZNF512 RUNX3 NFE2 MAFG EBF1 FEZF1 IFNG-AS1 lnc-IFNG-6 lnc-IFNG-5 LOC107984526 IFNG DYRK2
GH12J067939 Enhancer 1 Ensembl ENCODE dbSUPER 15 -47.8 -47758 4.6 CTCF POLR2A REST RAD21 TRIM22 GABPA ZNF561 CEBPB ARID3A SP1 IFNG-AS1 ENSG00000235872 LINC01479 piR-61532-071 LOC107984526 IFNG DYRK2
GH12J067980 Enhancer 0.8 Ensembl ENCODE 17.2 -7.9 -7881 2.2 JUND NFE2 FOS FOSL1 MAFG ZNF184 BATF YY1 SMARCA4 NFE2L2 IFNG-AS1 ENSG00000256835 lnc-IFNG-7 piR-52294-037 LOC107984526 IFNG DYRK2
GH12J068031 Enhancer 0.6 Ensembl ENCODE 18.9 +42.8 42846 1.1 ZNF316 MAFK MAFG MAFF EMSY IFNG-AS1 HNRNPA1P70 lnc-IFNG-5 LOC107984526 IFNG DYRK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IFNG-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IFNG-AS1 Gene

Genomic Locations for IFNG-AS1 Gene
chr12:67,989,382-68,234,687
(GRCh38/hg38)
Size:
245,306 bases
Orientation:
Plus strand
chr12:68,383,225-68,628,466
(GRCh37/hg19)
Size:
245,242 bases
Orientation:
Plus strand

Genomic View for IFNG-AS1 Gene

Genes around IFNG-AS1 on UCSC Golden Path with GeneCards custom track
IFNG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
IFNG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNG-AS1 Gene

Proteins for IFNG-AS1 Gene

Post-translational modifications for IFNG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNG-AS1 Gene

Domains & Families for IFNG-AS1 Gene

Gene Families for IFNG-AS1 Gene

genes like me logo Genes that share domains with IFNG-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IFNG-AS1 Gene

Function for IFNG-AS1 Gene

Phenotypes From GWAS Catalog for IFNG-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNG-AS1 Gene

Localization for IFNG-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IFNG-AS1 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1
endosome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IFNG-AS1 Gene

Pathways & Interactions for IFNG-AS1 Gene

PathCards logo

SuperPathways for IFNG-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for IFNG-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IFNG-AS1 Gene

Drugs & Compounds for IFNG-AS1 Gene

No Compound Related Data Available

Transcripts for IFNG-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for IFNG-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C8546_9606 lncRNA 1791 5

RefSeq: NR_104125,

Ensembl: ENST00000538665 (view in UCSC) ,

LncBook: HSALNT0190911,

LNCipedia: IFNG-AS1:2,

NONCODE: NONHSAT029277.2,

URS000075CD08_9606 lncRNA 1909 4

HGNC: 43910,

RefSeq: NR_104124,

LncBook: HSALNT0190912,

LNCipedia: IFNG-AS1:3,

URS00000ABCD8_9606 lncRNA 902 4

Ensembl: ENST00000541715 (view in UCSC) ,

LncBook: HSALNT0190913,

LNCipedia: IFNG-AS1:4,

NONCODE: NONHSAT029278.2,

URS00003E3BDF_9606 lncRNA 494 4

Ensembl: ENST00000536914 (view in UCSC) ,

LncBook: HSALNT0190915,

LNCipedia: IFNG-AS1:5,

NONCODE: NONHSAT029279.2,

URS0001A16EF5_9606 lncRNA 2608 1

Ensembl: ENST00000674322 (view in UCSC) ,

IFNG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for IFNG-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for IFNG-AS1 Gene

No ASD Table

Relevant External Links for IFNG-AS1 Gene

GeneLoc Exon Structure for
IFNG-AS1

Expression for IFNG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IFNG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IFNG-AS1 Gene

This gene is overexpressed in Spleen (x8.9).

SOURCE GeneReport for Unigene cluster for IFNG-AS1 Gene:

Hs.439832
genes like me logo Genes that share expression patterns with IFNG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNG-AS1 Gene

Orthologs for IFNG-AS1 Gene

Evolution for IFNG-AS1 Gene

ENSEMBL:
Gene Tree for IFNG-AS1 (if available)
TreeFam:
Gene Tree for IFNG-AS1 (if available)

No data available for Orthologs for IFNG-AS1 Gene

Paralogs for IFNG-AS1 Gene

No data available for Paralogs for IFNG-AS1 Gene

Variants for IFNG-AS1 Gene

Additional dbSNP identifiers (rs#s) for IFNG-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IFNG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039638 CNV gain 25217958
nsv975510 CNV duplication 23825009

Additional Variant Information for IFNG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for IFNG-AS1 Gene

Disorders for IFNG-AS1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for IFNG-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
ulcerative colitis
  • left-sided ulcerative colitis
sjogren syndrome
  • sicca syndrome
thrombocytopenia due to platelet alloimmunization
  • immune thrombocytopenic purpura
hashimoto thyroiditis
  • ht
multiple sclerosis
  • multiple sclerosis, susceptibility to
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with IFNG-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IFNG-AS1 Gene

Publications for IFNG-AS1 Gene

  1. Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. (PMID: 24056746) Hu G … Zhao K (Nature immunology 2013) 2 3
  2. Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15. (PMID: 11735227) Vigneau S … Bureau JF (Genomics 2001) 2 3
  3. The IBD-associated long noncoding RNA IFNG-AS1 regulates the balance between inflammatory and anti-inflammatory cytokine production after T-cell stimulation. (PMID: 31545920) Rankin CR … Padua DM (American journal of physiology. Gastrointestinal and liver physiology 2020) 3
  4. The Magnitude of IFN-γ Responses Is Fine-Tuned by DNA Architecture and the Non-coding Transcript of Ifng-as1. (PMID: 31377117) Petermann F … O'Shea JJ (Molecular cell 2019) 3
  5. A potential marker in brucellosis, long non coding RNA IFNG-AS1. (PMID: 31595441) Gheitasi R … Azizi Jalilian F (Molecular biology reports 2019) 3

Products for IFNG-AS1 Gene

Sources for IFNG-AS1 Gene