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Aliases for IFNG-AS1 Gene

Subcategory (RNA class) for IFNG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for IFNG-AS1 Gene

  • IFNG Antisense RNA 1 2 3 5
  • Theilers Murine Encephalomyelitis Virus Persistence Candidate Gene 1 2 3
  • IFNG Antisense RNA 1 (Non-Protein Coding) 2 3
  • LincR-Ifng-3AS 3
  • GS1-410F4.2 3
  • Tmevpg1 3
  • NEST 3

External Ids for IFNG-AS1 Gene

Previous GeneCards Identifiers for IFNG-AS1 Gene

  • GC12P068384

Summaries for IFNG-AS1 Gene

GeneCards Summary for IFNG-AS1 Gene

IFNG-AS1 (IFNG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with IFNG-AS1 include Thrombocytopenia Due To Platelet Alloimmunization and Hashimoto Thyroiditis.

Additional gene information for IFNG-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNG-AS1 Gene

Genomics for IFNG-AS1 Gene

GeneHancer (GH) Regulatory Elements for IFNG-AS1 Gene

Promoters and enhancers for IFNG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067988 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 667.4 +1.4 1384 4.8 PKNOX1 FOXA2 EBF1 BATF RELA GATA3 POLR2A EED ATF7 IKZF2 IFNG-AS1 LINC01479 IFNG IL22 DYRK2 GC12P067986 RPL39P28
GH12J067939 Enhancer 1 Ensembl ENCODE dbSUPER 15 -47.8 -47821 4.6 CTCF ZNF654 USF1 TRIM22 REST ZNF2 RAD21 GABPA RFX5 SP1 IFNG-AS1 ENSG00000235872 LINC01479 GC12P067957
GH12J068041 Enhancer 0.9 Ensembl ENCODE 13.5 +53.0 52981 1.6 CTCF SRF NR2F1 PAX8 ELF1 DPF2 RAD21 ZFHX2 POLR2A IKZF1 IFNG-AS1 HNRNPA1P70 GC12P068096
GH12J067980 Enhancer 0.6 ENCODE 17.2 -8.0 -7964 2.1 FOSL1 JUND POLR2A MAFG NFE2 FOS BATF SP7 GC12M067956 IFNG-AS1 GC12P067986
GH12J068031 Enhancer 0.5 ENCODE 18.9 +42.7 42675 0.9 ZNF316 MAFG EMSY MAFK IFNG-AS1 HNRNPA1P70 GC12M068016
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IFNG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IFNG-AS1 Gene

Genomic Locations for IFNG-AS1 Gene
chr12:67,989,445-68,234,686
(GRCh38/hg38)
Size:
245,242 bases
Orientation:
Plus strand
chr12:68,383,225-68,628,466
(GRCh37/hg19)
Size:
245,242 bases
Orientation:
Plus strand

Genomic View for IFNG-AS1 Gene

Genes around IFNG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IFNG-AS1 Gene

Proteins for IFNG-AS1 Gene

Post-translational modifications for IFNG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNG-AS1 Gene

Domains & Families for IFNG-AS1 Gene

Gene Families for IFNG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFNG-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFNG-AS1 Gene

Function for IFNG-AS1 Gene

Phenotypes From GWAS Catalog for IFNG-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNG-AS1 Gene

Localization for IFNG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IFNG-AS1 Gene

Pathways & Interactions for IFNG-AS1 Gene

SuperPathways for IFNG-AS1 Gene

No Data Available

Interacting Proteins for IFNG-AS1 Gene

Gene Ontology (GO) - Biological Process for IFNG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFNG-AS1 Gene

Drugs & Compounds for IFNG-AS1 Gene

No Compound Related Data Available

Transcripts for IFNG-AS1 Gene

mRNA/cDNA for IFNG-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for IFNG-AS1 Gene

IFNG antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for IFNG-AS1 Gene

No ASD Table

Relevant External Links for IFNG-AS1 Gene

GeneLoc Exon Structure for
IFNG-AS1
ECgene alternative splicing isoforms for
IFNG-AS1

Expression for IFNG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IFNG-AS1 Gene

This gene is overexpressed in Spleen (x8.9).

SOURCE GeneReport for Unigene cluster for IFNG-AS1 Gene:

Hs.439832
genes like me logo Genes that share expression patterns with IFNG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNG-AS1 Gene

Orthologs for IFNG-AS1 Gene

Evolution for IFNG-AS1 Gene

ENSEMBL:
Gene Tree for IFNG-AS1 (if available)
TreeFam:
Gene Tree for IFNG-AS1 (if available)

No data available for Orthologs for IFNG-AS1 Gene

Paralogs for IFNG-AS1 Gene

No data available for Paralogs for IFNG-AS1 Gene

Variants for IFNG-AS1 Gene

Sequence variations from dbSNP and Humsavar for IFNG-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000063486 -- 68,005,447(+) G/A intron_variant
rs1000067275 -- 68,020,497(+) G/A/T non_coding_transcript_variant
rs1000086668 -- 68,014,289(+) C/G intron_variant
rs1000292013 -- 68,007,980(+) A/G intron_variant
rs1000420014 -- 68,020,217(+) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for IFNG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv975510 CNV duplication 23825009
nsv1039638 CNV gain 25217958

Additional Variant Information for IFNG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IFNG-AS1 Gene

Disorders for IFNG-AS1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for IFNG-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
thrombocytopenia due to platelet alloimmunization
  • immune thrombocytopenic purpura
hashimoto thyroiditis
  • ht
ulcerative colitis
  • left-sided ulcerative colitis
sjogren syndrome
  • sicca syndrome
multiple sclerosis
  • multiple sclerosis, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for IFNG-AS1

genes like me logo Genes that share disorders with IFNG-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IFNG-AS1 Gene

Publications for IFNG-AS1 Gene

  1. Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. (PMID: 24056746) Hu G … Zhao K (Nature immunology 2013) 2 3 58
  2. Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15. (PMID: 11735227) Vigneau S … Bureau JF (Genomics 2001) 2 3 58
  3. Long non-coding and endogenous retroviral RNA levels are associated with proinflammatory cytokine mRNA expression in peripheral blood cells: Implications for schizophrenia. (PMID: 28942956) Melbourne JK … Sharma RP (Psychiatry research 2018) 3 58
  4. IFNA-AS1 regulates CD4+ T cell activation in myasthenia gravis though HLA-DRB1. (PMID: 28822831) Luo M … Yang H (Clinical immunology (Orlando, Fla.) 2017) 3 58
  5. Aberrant expression of long noncoding RNA TMEVPG1 in patients with primary immune thrombocytopenia. (PMID: 27050808) Li H … Yang R (Autoimmunity 2016) 3 58

Products for IFNG-AS1 Gene

Sources for IFNG-AS1 Gene

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