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IFNA22P Gene(Pseudogene)

Interferon Alpha 22, Pseudogene

GCID:
GC09M021297
GIFtS:
14
Genes Participants
UDN Logo

Aliases for IFNA22P Gene

Subcategory (RNA class) for IFNA22P Gene

lncRNA

Aliases for IFNA22P Gene

  • Interferon Alpha 22, Pseudogene 2 3 5
  • Interferon, Alpha Pseudogene 22 2 3
  • Interferon, Alpha 7 Pseudogene 3
  • IFNAP22 3

External Ids for IFNA22P Gene

ORGUL Members for IFNA22P Gene

Previous HGNC Symbols for IFNA22P Gene

  • IFNAP22

Previous GeneCards Identifiers for IFNA22P Gene

  • GC09M021280
  • GC09M021281
  • GC09M021286
  • GC09M021291

Summaries for IFNA22P Gene

GeneCards Summary for IFNA22P Gene

IFNA22P (Interferon Alpha 22, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for IFNA22P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFNA22P Gene

Genomics for IFNA22P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for IFNA22P Gene

Promoters and enhancers for IFNA22P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I021294 Enhancer 0.6 ENCODE 0.4 -15.9 -15868 0.2 JUN MAX USF2 CEBPB EP300 JUND POLR2A SCRT2 FOS TCF7L2 IFNA13 IFNA5 IFNA22P
GH09I021252 Enhancer 0.8 Ensembl ENCODE 0.3 +25.4 25354 0.7 CTCF PKNOX1 ZNF654 FOXA2 SIN3A RAD21 POLR2A ZNF143 SMC3 RUNX3 IFNA12P IFNA8 IFNWP2 IFNA13 IFNA20P IFNA14 IFNA22P
GH09I021268 Enhancer 0.5 Ensembl 0.4 +10.4 10418 0.4 IKZF1 EBF1 BMI1 DPF2 IKZF2 SPI1 IFNA5 IFNA12P IFNA8 IFNWP2 IFNA13 MIR31 IFNA22P IFNA14
GH09I021286 Enhancer 0.4 Ensembl 0.4 -8.5 -8504 1 POLR2A SPI1 IFNA13 IFNA20P IFNA22P IFNA5
GH09I021239 Promoter 0.5 EPDnew 0.3 +38.6 38594 0.1 IFNA14 IFNA5 IFNA13 IFNA22P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IFNA22P on UCSC Golden Path with GeneCards custom track

Genomic Locations for IFNA22P Gene

Genomic Locations for IFNA22P Gene
chr9:21,277,688-21,278,619
(GRCh38/hg38)
Size:
932 bases
Orientation:
Minus strand
chr9:21,277,687-21,278,618
(GRCh37/hg19)

Genomic View for IFNA22P Gene

Genes around IFNA22P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFNA22P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFNA22P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for IFNA22P Gene

Proteins for IFNA22P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for IFNA22P Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFNA22P Gene

Domains & Families for IFNA22P Gene

Gene Families for IFNA22P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFNA22P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFNA22P Gene

Function for IFNA22P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for IFNA22P Gene

GenomeRNAi human phenotypes for IFNA22P:
genes like me logo Genes that share phenotypes with IFNA22P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFNA22P Gene

Localization for IFNA22P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IFNA22P Gene

Pathways & Interactions for IFNA22P Gene

SuperPathways for IFNA22P Gene

PathCards logo More details on SuperPathways for IFNA22P
No Data Available

Interacting Proteins for IFNA22P Gene

Gene Ontology (GO) - Biological Process for IFNA22P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFNA22P Gene

Drugs & Compounds for IFNA22P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for IFNA22P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for IFNA22P Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFNA22P Gene

No ASD Table

Relevant External Links for IFNA22P Gene

GeneLoc Exon Structure for
IFNA22P
ECgene alternative splicing isoforms for
IFNA22P

Expression for IFNA22P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFNA22P Gene

mRNA expression in normal human tissues for IFNA22P Gene
mRNA expression by GTEx for IFNA22P Gene

NURSA nuclear receptor signaling pathways regulating expression of IFNA22P Gene:

IFNA22P

SOURCE GeneReport for Unigene cluster for IFNA22P Gene:

Hs.545842
genes like me logo Genes that share expression patterns with IFNA22P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFNA22P Gene

Orthologs for IFNA22P Gene

Evolution for IFNA22P Gene

ENSEMBL:
Gene Tree for IFNA22P (if available)
TreeFam:
Gene Tree for IFNA22P (if available)

No data available for Orthologs for IFNA22P Gene

Paralogs for IFNA22P Gene

No data available for Paralogs for IFNA22P Gene

Variants for IFNA22P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for IFNA22P Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000059424 -- 21,279,392(-) C/T upstream_transcript_variant
rs1000370710 -- 21,277,694(-) T/C non_coding_transcript_variant
rs1000847403 -- 21,277,447(-) C/T downstream_transcript_variant
rs1000877841 -- 21,279,689(-) A/G upstream_transcript_variant
rs1001229880 -- 21,279,638(-) C/A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for IFNA22P Gene

Variant ID Type Subtype PubMed ID
esv2761295 CNV gain 21179565
esv2764150 CNV gain+loss 21179565
esv3619958 CNV loss 21293372
esv3619959 CNV gain 21293372
nsv968600 CNV duplication 23825009

Additional Variant Information for IFNA22P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFNA22P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IFNA22P Gene

Disorders for IFNA22P Gene

Additional Disease Information for IFNA22P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for IFNA22P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFNA22P Gene

Publications for IFNA22P Gene

  1. Structure of the human type-I interferon gene cluster determined from a YAC clone contig. (PMID: 8001965) Díaz MO … Olopade OI (Genomics 1994) 2 3 58
  2. Mapping of the shortest region of overlap of deletions of the short arm of chromosome 9 associated with human neoplasia. (PMID: 1385305) Olopade OI … Diaz MO (Genomics 1992) 2 3 58
  3. The structure of eight distinct cloned human leukocyte interferon cDNAs. (PMID: 6163083) Goeddel DV … Gray PW (Nature 1981) 3 58

Products for IFNA22P Gene

Sources for IFNA22P Gene

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