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IFITM4P Gene(Pseudogene)

Interferon Induced Transmembrane Protein 4 Pseudogene

GCID:
GC06M030325
GIFtS:
16
Genes Participants
UDN Logo

Aliases for IFITM4P Gene

Aliases for IFITM4P Gene

  • Interferon Induced Transmembrane Protein 4 Pseudogene 2 3 5
  • Interferon-Induced Transmembrane Protein 3 (Interferon-Inducible Protein 1-8U) 3
  • DJ377H14.5 3

External Ids for IFITM4P Gene

Previous GeneCards Identifiers for IFITM4P Gene

  • GC06M029826
  • GC06M029719
  • GC06M029522
  • GC06M029720
  • GC06M029723
  • GC06M029728
  • GC06M029736
  • GC06M029743
  • GC06M029754
  • GC06M029755
  • GC06M029843
  • GC06M029863
  • GC06M030112
  • GC06M030180
  • GC06M030216
  • GC06M030250

Summaries for IFITM4P Gene

GeneCards Summary for IFITM4P Gene

IFITM4P (Interferon Induced Transmembrane Protein 4 Pseudogene) is a Pseudogene.

Additional gene information for IFITM4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IFITM4P Gene

Genomics for IFITM4P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for IFITM4P Gene

Promoters and enhancers for IFITM4P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J029751 Promoter/Enhancer 1.6 Ensembl ENCODE 672.8 -1.7 -1695 2 PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 CBX5 IFITM4P ENSG00000272236 RPL23AP1 MDC1 HCG4P5 ZNF311 ZNRD1ASP ZFP57 MICE HLA-A
GH06J029722 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 21.4 +26.6 26565 4.1 SMAD1 GLIS2 ZNF207 ZNF143 FOS NFYC REST NBN KDM1A HNF4A HLA-F HLA-J ZFP57 ZNRD1 HLA-H HCG4P5 IFITM4P HLA-F-AS1 DHX16 MICE
GH06J030065 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16 -315.7 -315657 3 ZFP64 DMAP1 YBX1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 NFYC PPP1R11 TRIM39 ZNRD1 HCG4P3 TRIM26 PPP1R10 NRM MDC1 HLA-A RPL7P4
GH06J029676 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 21.8 +72.2 72222 4.6 SRF POLR2A CEBPB PRDM1 ZFP57 RPL23AP1 IFITM4P HLA-H ZNRD1 ZNRD1ASP HLA-J MICE MICD MOG
GH06J029963 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.9 -215.1 -215101 4.8 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 HLA-A HLA-K HCG4P3 ZNRD1 HLA-W TRIM39 HLA-H PPP1R10 MDC1 DHX16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around IFITM4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for IFITM4P Gene

Genomic Locations for IFITM4P Gene
chr6:29,750,729-29,751,148
(GRCh38/hg38)
Size:
420 bases
Orientation:
Minus strand
chr6:29,718,506-29,718,925
(GRCh37/hg19)
Size:
420 bases
Orientation:
Minus strand

Genomic View for IFITM4P Gene

Genes around IFITM4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IFITM4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IFITM4P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for IFITM4P Gene

Proteins for IFITM4P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for IFITM4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for IFITM4P Gene

Domains & Families for IFITM4P Gene

Gene Families for IFITM4P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with IFITM4P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for IFITM4P Gene

Function for IFITM4P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for IFITM4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IFITM4P Gene

Localization for IFITM4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IFITM4P Gene

Pathways & Interactions for IFITM4P Gene

SuperPathways for IFITM4P Gene

PathCards logo More details on SuperPathways for IFITM4P
No Data Available

Interacting Proteins for IFITM4P Gene

Gene Ontology (GO) - Biological Process for IFITM4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IFITM4P Gene

Drugs & Compounds for IFITM4P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for IFITM4P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for IFITM4P Gene

(1) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for IFITM4P Gene

Interferon induced transmembrane protein 4 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for IFITM4P Gene

No ASD Table

Relevant External Links for IFITM4P Gene

GeneLoc Exon Structure for
IFITM4P
ECgene alternative splicing isoforms for
IFITM4P

Expression for IFITM4P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IFITM4P Gene

mRNA expression in normal human tissues for IFITM4P Gene
mRNA expression by GTEx for IFITM4P Gene

NURSA nuclear receptor signaling pathways regulating expression of IFITM4P Gene:

IFITM4P

SOURCE GeneReport for Unigene cluster for IFITM4P Gene:

Hs.450189
genes like me logo Genes that share expression patterns with IFITM4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IFITM4P Gene

Orthologs for IFITM4P Gene

Evolution for IFITM4P Gene

ENSEMBL:
Gene Tree for IFITM4P (if available)
TreeFam:
Gene Tree for IFITM4P (if available)

No data available for Orthologs for IFITM4P Gene

Paralogs for IFITM4P Gene

No data available for Paralogs for IFITM4P Gene

Variants for IFITM4P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for IFITM4P Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000659537 -- 29,750,321(-) C/T downstream_transcript_variant
rs1001008836 -- 29,750,595(-) C/A downstream_transcript_variant
rs1001123105 -- 29,752,843(-) G/A upstream_transcript_variant
rs1002284711 -- 29,752,443(-) C/T upstream_transcript_variant
rs1002724646 -- 29,752,213(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for IFITM4P Gene

Variant ID Type Subtype PubMed ID
nsv969373 CNV duplication 23825009
nsv508397 CNV deletion 20534489
nsv428139 CNV gain 18775914
nsv1144137 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv10809 CNV gain 18304495
nsv1074389 CNV deletion 25765185
esv2731768 CNV deletion 23290073
esv25966 CNV gain+loss 19812545
dgv992e201 CNV deletion 23290073

Additional Variant Information for IFITM4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IFITM4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for IFITM4P Gene

Disorders for IFITM4P Gene

Additional Disease Information for IFITM4P

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for IFITM4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IFITM4P Gene

Publications for IFITM4P Gene

  1. The broad-spectrum antiviral functions of IFIT and IFITM proteins. (PMID: 23237964) Diamond MS … Farzan M (Nature reviews. Immunology 2013) 3 58
  2. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny EE … Peter I (PLoS genetics 2012) 44 58
  3. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behçet's disease. (PMID: 20622878) Remmers EF … Gül A (Nature genetics 2010) 44 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for IFITM4P Gene

Sources for IFITM4P Gene

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