Aliases for IDI2-AS1 Gene

Subcategory (RNA class) for IDI2-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for IDI2-AS1 Gene

  • IDI2 Antisense RNA 1 2 3 4 5
  • IDI2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • IDI2 Antisense RNA (Non-Protein Coding) 2 3
  • C10orf110 3 4
  • Chromosome 10 Open Reading Frame 110 2
  • Uncharacterized Protein IDI2-AS1 4
  • IDI2 Antisense Gene Protein 1 4
  • HSALNG0075528 167
  • NONHSAG004975 92
  • IDI2-AS1 2
  • IDI2-AS 3
  • HT009 3

External Ids for IDI2-AS1 Gene

Previous HGNC Symbols for IDI2-AS1 Gene

  • C10orf110
  • IDI2-AS

Previous GeneCards Identifiers for IDI2-AS1 Gene

  • GC10P001068
  • GC10P001025
  • GC10P001026
  • GC10P001035
  • GC10P001036
  • GC10P001043
  • GC10P001027
  • GC10P001028
  • GC10P001029
  • GC10P001030
  • GC10P001031
  • GC10P001032
  • GC10P001033

Summaries for IDI2-AS1 Gene

GeneCards Summary for IDI2-AS1 Gene

IDI2-AS1 (IDI2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for IDI2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IDI2-AS1 Gene

Genomics for IDI2-AS1 Gene

GeneHancer (GH) Regulatory Elements for IDI2-AS1 Gene

Promoters and enhancers for IDI2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J001042 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 19.1 +24.4 24445 8.9 FOXK2 ZBTB40 ZNF217 EP300 SIN3A TCF12 NRF1 POLR2G SP1 GTF2E2 WDR37 lnc-IDI2-1 IDI1 IDI2 IDI2-AS1 ENSG00000205740 GTPBP4 LARP4B lnc-IDI1-2 piR-50437-033
GH10J001054 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.8 +34.0 33957 4.4 HNRNPK ZBTB40 ZNF217 EP300 NRF1 TCF12 POLR2G PHF8 JUND FOS WDR37 IDI1 lnc-IDI1-2 IDI2 IDI2-AS1
GH10J001035 Enhancer 1.1 Ensembl ENCODE dbSUPER 7.1 +13.6 13646 2.1 FOS POLR2A MYC TCF12 USF2 MAX MEF2B FOSL1 USF1 BATF IDI2 WDR37 IDI2-AS1 piR-50437-033 lnc-IDI2-1
GH10J001034 Enhancer 0.3 ENCODE 6.2 +12.3 12295 0.2 ZFX FOXA1 GTPBP4 ENSG00000205740 IDI2-AS1 piR-50437-033 lnc-IDI2-1
GH10J001025 Promoter 0.4 EPDnew 0.7 +3.3 3278 0.1 GATA3 IDI2 IDI2-AS1 piR-50437-033
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IDI2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for IDI2-AS1 Gene

Genomic Locations for IDI2-AS1 Gene
chr10:1,022,601-1,045,425
(GRCh38/hg38)
Size:
22,825 bases
Orientation:
Plus strand
chr10:1,068,577-1,090,141
(GRCh37/hg19)
Size:
21,565 bases
Orientation:
Plus strand

Genomic View for IDI2-AS1 Gene

Genes around IDI2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IDI2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IDI2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IDI2-AS1 Gene

Proteins for IDI2-AS1 Gene

  • Protein details for IDI2-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZ38-IDAS1_HUMAN
    Recommended name:
    Uncharacterized protein IDI2-AS1
    Protein Accession:
    Q9NZ38

    Protein attributes for IDI2-AS1 Gene

    Size:
    188 amino acids
    Molecular mass:
    21312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IDI2-AS1 Gene

Post-translational modifications for IDI2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for IDI2-AS1 Gene

Domains & Families for IDI2-AS1 Gene

Protein Domains for IDI2-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for IDI2-AS1 Gene

GenScript: Design optimal peptide antigens:
  • HT009-like protein (Q9BXS2_HUMAN)
genes like me logo Genes that share domains with IDI2-AS1: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IDI2-AS1 Gene

Function for IDI2-AS1 Gene

Phenotypes From GWAS Catalog for IDI2-AS1 Gene

Phenotypes for IDI2-AS1 Gene

genes like me logo Genes that share phenotypes with IDI2-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for IDI2-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IDI2-AS1 Gene

Localization for IDI2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IDI2-AS1 Gene

Pathways & Interactions for IDI2-AS1 Gene

PathCards logo

SuperPathways for IDI2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for IDI2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IDI2-AS1 Gene

Drugs & Compounds for IDI2-AS1 Gene

No Compound Related Data Available

Transcripts for IDI2-AS1 Gene

mRNA/cDNA for IDI2-AS1 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for IDI2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for IDI2-AS1 Gene

No ASD Table

Relevant External Links for IDI2-AS1 Gene

GeneLoc Exon Structure for
IDI2-AS1

Expression for IDI2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for IDI2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for IDI2-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x4.4).

Protein differential expression in normal tissues from HIPED for IDI2-AS1 Gene

This gene is overexpressed in Plasma (46.9) and Urine (22.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for IDI2-AS1 Gene



Protein tissue co-expression partners for IDI2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IDI2-AS1

SOURCE GeneReport for Unigene cluster for IDI2-AS1 Gene:

Hs.728538
genes like me logo Genes that share expression patterns with IDI2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IDI2-AS1 Gene

Orthologs for IDI2-AS1 Gene

Evolution for IDI2-AS1 Gene

ENSEMBL:
Gene Tree for IDI2-AS1 (if available)
TreeFam:
Gene Tree for IDI2-AS1 (if available)

No data available for Orthologs for IDI2-AS1 Gene

Paralogs for IDI2-AS1 Gene

(1) SIMAP similar genes for IDI2-AS1 Gene using alignment to 1 proteins:

  • IDAS1_HUMAN
genes like me logo Genes that share paralogs with IDI2-AS1: view

No data available for Paralogs for IDI2-AS1 Gene

Variants for IDI2-AS1 Gene

Additional dbSNP identifiers (rs#s) for IDI2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for IDI2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1000079 CNV deletion 20482838
esv1721755 CNV deletion 17803354
esv2156728 CNV deletion 18987734
esv2657863 CNV deletion 23128226
esv2660097 CNV deletion 23128226
esv2673024 CNV deletion 23128226
esv2729350 CNV deletion 23290073
esv2729362 CNV deletion 23290073
esv3622095 CNV loss 21293372
esv3891735 CNV gain 25118596
nsv1046220 CNV gain 25217958
nsv1161921 CNV duplication 26073780
nsv474852 CNV novel sequence insertion 20440878
nsv549765 CNV gain 21841781
nsv549767 CNV loss 21841781
nsv5532 CNV deletion 18451855
nsv951231 CNV duplication 24416366

Additional Variant Information for IDI2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IDI2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for IDI2-AS1 Gene

Disorders for IDI2-AS1 Gene

Additional Disease Information for IDI2-AS1

No disorders were found for IDI2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IDI2-AS1 Gene

Publications for IDI2-AS1 Gene

  1. Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response. (PMID: 24036268) Tani H … Torimura M (Biochemical and biophysical research communications 2013) 2 3 54
  2. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu RM … Chen JL (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 4 54
  3. Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker. (PMID: 22566498) Turner ST … Boerwinkle E (Hypertension (Dallas, Tex. : 1979) 2012) 3 54
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 4 54
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for IDI2-AS1 Gene

Sources for IDI2-AS1 Gene