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Aliases for ID2-AS1 Gene

Subcategory (RNA class) for ID2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ID2-AS1 Gene

  • ID2 Antisense RNA 1 2 3
  • ID2 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for ID2-AS1 Gene

Summaries for ID2-AS1 Gene

GeneCards Summary for ID2-AS1 Gene

ID2-AS1 (ID2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ID2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ID2-AS1 Gene

Genomics for ID2-AS1 Gene

GeneHancer (GH) Regulatory Elements for ID2-AS1 Gene

Promoters and enhancers for ID2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J008675 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 657.1 +0.9 860 10.9 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 ID2-AS1 ID2 ENSG00000239300 CPSF3 LOC101929551
GH02J008571 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +108.0 107994 5.1 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT MLX ZFP64 ARID4B YBX1 ENSG00000231435 LINC01814 ID2 ID2-AS1 LINC00299
GH02J008623 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +54.9 54932 6.1 CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 YY1 FOS MCM3 SP5 ID2 ID2-AS1 LOC105373411 PIR42179
GH02J008533 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +144.4 144371 7.1 PKNOX1 FOXA2 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZNF48 YY1 TCF12 ID2 ID2-AS1 KIDINS220 ENSG00000231435 LINC00299
GH02J008300 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +379.2 379228 3.4 PKNOX1 ATF1 SMAD1 IRF4 TCF12 GATA2 ZNF207 ZNF143 ATF7 FOS ID2 ID2-AS1 LINC00298 LINC00299
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ID2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ID2-AS1 Gene

Genomic Locations for ID2-AS1 Gene
chr2:8,666,636-8,681,863
(GRCh38/hg38)
Size:
15,228 bases
Orientation:
Minus strand
chr2:8,806,766-8,821,993
(GRCh37/hg19)
Size:
15,228 bases
Orientation:
Minus strand

Genomic View for ID2-AS1 Gene

Genes around ID2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ID2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ID2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ID2-AS1 Gene

Function for ID2-AS1 Gene

Phenotypes From GWAS Catalog for ID2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ID2-AS1 Gene

Localization for ID2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ID2-AS1 Gene

Pathways & Interactions for ID2-AS1 Gene

SuperPathways for ID2-AS1 Gene

No Data Available

Interacting Proteins for ID2-AS1 Gene

Gene Ontology (GO) - Biological Process for ID2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ID2-AS1 Gene

Drugs & Compounds for ID2-AS1 Gene

No Compound Related Data Available

Transcripts for ID2-AS1 Gene

mRNA/cDNA for ID2-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ID2-AS1 Gene

No ASD Table

Relevant External Links for ID2-AS1 Gene

GeneLoc Exon Structure for
ID2-AS1
ECgene alternative splicing isoforms for
ID2-AS1

Expression for ID2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ID2-AS1 Gene

genes like me logo Genes that share expression patterns with ID2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ID2-AS1 Gene

Orthologs for ID2-AS1 Gene

Evolution for ID2-AS1 Gene

ENSEMBL:
Gene Tree for ID2-AS1 (if available)
TreeFam:
Gene Tree for ID2-AS1 (if available)

No data available for Orthologs for ID2-AS1 Gene

Paralogs for ID2-AS1 Gene

No data available for Paralogs for ID2-AS1 Gene

Variants for ID2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ID2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000098881 -- 8,680,330(-) G/T intron_variant, non_coding_transcript_variant
rs1000154781 -- 8,680,184(-) A/G intron_variant, non_coding_transcript_variant
rs1000207077 -- 8,680,023(-) G/A intron_variant, non_coding_transcript_variant
rs1000358112 -- 8,675,841(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000366805 -- 8,671,174(-) T/C genic_downstream_transcript_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ID2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1860n106 CNV deletion 24896259
nsv1072386 CNV deletion 25765185
nsv472539 CNV novel sequence insertion 20440878

Additional Variant Information for ID2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ID2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ID2-AS1 Gene

Disorders for ID2-AS1 Gene

Additional Disease Information for ID2-AS1

No disorders were found for ID2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ID2-AS1 Gene

Publications for ID2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for ID2-AS1 Gene

Sources for ID2-AS1 Gene

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