Aliases for IBA57-DT Gene

RNA type for IBA57-DT Gene

lncRNA

Aliases for IBA57-DT Gene

External Ids for IBA57-DT Gene

Previous HGNC Symbols for IBA57-DT Gene

  • C1orf148
  • IBA57-AS1

Summaries for IBA57-DT Gene

GeneCards Summary for IBA57-DT Gene

IBA57-DT (IBA57 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IBA57-DT Gene

Genomics for IBA57-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for IBA57-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J228161 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.9 930 6.2 BCLAF1 SP1 ZNF207 IKZF1 NCOR1 MYC ZNF600 SIX5 JUND ZNF580 IBA57 IBA57-DT NONHSAG004528.2 piR-52738 OBSCN CICP26 C1orf35 ZNF678 CDC42BPA OBSCN-AS1
GH01J227733 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +430.3 430260 3.1 BCLAF1 SP1 ZNF207 ZNF600 MYC SIX5 ZNF580 ZMYM3 KLF9 POLR2A JMJD4 SNAP47 lnc-WNT9A-3 CICP26 C1orf35 ZNF678 CDC42BPA H3-4 MRPL55 IBA57-DT
GH01J228455 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 -292.3 -292289 4.8 BCLAF1 SP1 MYC NCOR1 ZNF600 IKZF1 ZNF580 ZNF592 ATF2 POLR2A H2AW H2BU1 HSALNG0011252 CICP26 C1orf35 ZNF678 H3-4 JMJD4 BTNL10 MRPL55
GH01J227322 Enhancer 0.9 Ensembl ENCODE 13.1 +842.1 842149 1.7 CEBPB EP300 PRDM1 RXRA RAD21 TCF7L2 USF2 GATA3 JUND EHMT2 IBA57-DT CDC42BPA HSALNG0011135 HSALNG0011136 ZNF678
GH01J228092 Enhancer 0.5 dbSUPER 13.3 +72.8 72807 0.9 POLR2A SMARCE1 DPF2 ZNF560 ZNF579 HSALNG0011192 IBA57-DT RPL23AP15 H2AW H2BU1 MIR3620 ARF1 C1orf35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IBA57-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for IBA57-DT Gene

Latest Assembly
chr1:228,164,085-228,165,512
(GRCh38/hg38)
Size:
1,428 bases
Orientation:
Minus strand

Previous Assembly
chr1:228,351,787-228,353,213
(GRCh37/hg19 by Entrez Gene)
Size:
1,427 bases
Orientation:
Minus strand

chr1:228,351,787-228,353,213
(GRCh37/hg19 by Ensembl)
Size:
1,427 bases
Orientation:
Minus strand

Genomic View for IBA57-DT Gene

Genes around IBA57-DT on UCSC Golden Path with GeneCards custom track
IBA57-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
IBA57-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IBA57-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IBA57-DT Gene

Proteins for IBA57-DT Gene

  • Protein details for IBA57-DT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1ANH7-IBADT_HUMAN
    Recommended name:
    Putative uncharacterized protein IBA57-DT
    Protein Accession:
    B1ANH7

    Protein attributes for IBA57-DT Gene

    Size:
    110 amino acids
    Molecular mass:
    12198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for IBA57-DT Gene

Post-translational modifications for IBA57-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for IBA57-DT Gene

Domains & Families for IBA57-DT Gene

Gene Families for IBA57-DT Gene

genes like me logo Genes that share domains with IBA57-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IBA57-DT Gene

Function for IBA57-DT Gene

Phenotypes From GWAS Catalog for IBA57-DT Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IBA57-DT Gene

Localization for IBA57-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IBA57-DT gene
Compartment Confidence
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IBA57-DT Gene

Pathways & Interactions for IBA57-DT Gene

PathCards logo

SuperPathways for IBA57-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for IBA57-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for IBA57-DT Gene

Drugs & Compounds for IBA57-DT Gene

No Compound Related Data Available

Transcripts for IBA57-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for IBA57-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075A09E_9606 lncRNA 448 4

RefSeq: NR_103540,

Ensembl: ENST00000366713 (view in UCSC) ,

LNCipedia: IBA57-DT:5,

NONCODE: NONHSAT153066.1,

URS000075D948_9606 lncRNA 602 3

RefSeq: NR_103539,

LNCipedia: IBA57-DT:6,

NONCODE: NONHSAT009994.2,

URS000077AFBC_9606 lncRNA 596 2

Ensembl: ENST00000496552 (view in UCSC) ,

LNCipedia: IBA57-DT:7,

IBA57-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for IBA57-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for IBA57-DT Gene

No ASD Table

Relevant External Links for IBA57-DT Gene

GeneLoc Exon Structure for
IBA57-DT

Expression for IBA57-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for IBA57-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IBA57-DT Gene

Orthologs for IBA57-DT Gene

Evolution for IBA57-DT Gene

ENSEMBL:
Gene Tree for IBA57-DT (if available)
TreeFam:
Gene Tree for IBA57-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for IBA57-DT

No data available for Orthologs for IBA57-DT Gene

Paralogs for IBA57-DT Gene

No data available for Paralogs for IBA57-DT Gene

Variants for IBA57-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for IBA57-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for IBA57-DT Gene

Variant ID Type Subtype PubMed ID
dgv839n54 CNV loss 21841781
esv32853 CNV gain 17666407
nsv1160102 CNV deletion 26073780
nsv523935 CNV loss 19592680
nsv826908 CNV gain 20364138
nsv827019 CNV loss 20364138
nsv952137 CNV deletion 24416366

Variation tolerance for IBA57-DT Gene

Gene Damage Index Score: 2.68; 46.01% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for IBA57-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IBA57-DT
Leiden Open Variation Database (LOVD)
IBA57-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for IBA57-DT Gene

Disorders for IBA57-DT Gene

Additional Disease Information for IBA57-DT

No disorders were found for IBA57-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for IBA57-DT Gene

Publications for IBA57-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4

Products for IBA57-DT Gene

Sources for IBA57-DT Gene