Aliases for IATPR Gene

Subcategory (RNA class) for IATPR Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for IATPR Gene

  • ITGB1 Adjacent Tumor Promoting LncRNA 2 3 5
  • TCONS_00018476 3
  • HSALNG0077173 169
  • NONHSAG005583 94
  • Lnc-ITGB1-6 170
  • Linc-ITGB1 3

External Ids for IATPR Gene

Summaries for IATPR Gene

GeneCards Summary for IATPR Gene

IATPR (ITGB1 Adjacent Tumor Promoting LncRNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with IATPR include Hepatocellular Carcinoma.

Additional gene information for IATPR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for IATPR Gene

Genomics for IATPR Gene

GeneHancer (GH) Regulatory Elements for IATPR Gene

Promoters and enhancers for IATPR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J033112 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 750.6 +1.2 1170 7 CTCF RAD21 TEAD4 CEBPB JUN JUND SP1 ZSCAN5C EP300 FOS IATPR ENSG00000238258 NRP1 ENSG00000273038 piR-38351-040 lnc-NRP1-4
GH10J033133 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -19.8 -19790 6.6 SIN3A POLR2A USF2 ZNF362 MAX MNT ZNF280D ZBTB33 SP7 ZSCAN21 EPC1 ENSG00000226842 ENSG00000273038 CCDC7 AK3P5 IATPR lnc-NRP1-4
GH10J033150 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -37.1 -37094 8.6 SIN3A CTCF LCORL FOXA1 MLX RBPJ POLR2A USF2 NR2F1 NR2F6 ENSG00000273038 AK3P5 CCDC7 lnc-NRP1-4 IATPR
GH10J033125 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 -9.8 -9817 2.6 GABPA YY1 NR2F2 ZNF395 ENSG00000273038 IATPR lnc-NRP1-4
GH10J033128 Enhancer 0.9 ENCODE dbSUPER 0.4 -13.1 -13137 2.8 L3MBTL2 RAD21 MAFK PRDM1 CEBPA RXRA CEBPB MNT SP1 MGA ENSG00000273038 CCDC7 IATPR lnc-NRP1-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around IATPR on UCSC Golden Path with GeneCards custom track

Genomic Locations for IATPR Gene

Genomic Locations for IATPR Gene
chr10:33,055,917-33,116,807
(GRCh38/hg38)
Size:
60,891 bases
Orientation:
Minus strand

Genomic View for IATPR Gene

Genes around IATPR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IATPR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IATPR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IATPR Gene

Proteins for IATPR Gene

No data available for DME Specific Peptides for IATPR Gene

Domains & Families for IATPR Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for IATPR Gene

Function for IATPR Gene

Phenotypes From GWAS Catalog for IATPR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for IATPR Gene

Localization for IATPR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for IATPR Gene

Pathways & Interactions for IATPR Gene

PathCards logo

SuperPathways for IATPR Gene

No Data Available

Gene Ontology (GO) - Biological Process for IATPR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for IATPR Gene

Drugs & Compounds for IATPR Gene

No Compound Related Data Available

Transcripts for IATPR Gene

mRNA/cDNA for IATPR Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(5) LncBook transcripts :
(3) NONCODE transcripts :
(8) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for IATPR Gene

No ASD Table

Relevant External Links for IATPR Gene

GeneLoc Exon Structure for
IATPR
ECgene alternative splicing isoforms for
IATPR

Expression for IATPR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for IATPR Gene

Orthologs for IATPR Gene

Evolution for IATPR Gene

ENSEMBL:
Gene Tree for IATPR (if available)
TreeFam:
Gene Tree for IATPR (if available)

No data available for Orthologs for IATPR Gene

Paralogs for IATPR Gene

No data available for Paralogs for IATPR Gene

Variants for IATPR Gene

Sequence variations from dbSNP and Humsavar for IATPR Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000031335 -- 33,110,726(-) G/A intron_variant
rs1000070770 -- 33,115,501(-) G/A intron_variant
rs1000214010 -- 33,075,938(-) T/A intron_variant
rs1000298512 -- 33,099,573(-) G/T intron_variant
rs1000439026 -- 33,105,287(-) G/C intron_variant

Additional Variant Information for IATPR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IATPR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for IATPR Gene

Disorders for IATPR Gene

MalaCards: The human disease database

(1) MalaCards diseases for IATPR Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
Search IATPR in MalaCards View complete list of genes associated with diseases

Additional Disease Information for IATPR

genes like me logo Genes that share disorders with IATPR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IATPR Gene

Publications for IATPR Gene

  1. Expression of long non-coding RNA linc-ITGB1 in breast cancer and its influence on prognosis and survival. (PMID: 28829502) Li WX … Sun SR (European review for medical and pharmacological sciences 2017) 2 3 56
  2. Long noncoding RNA linc-ITGB1 promotes cell migration and invasion in human breast cancer. (PMID: 26601916) Yan M … Cen X (Biotechnology and applied biochemistry 2017) 2 3 56
  3. Knockdown of long non-coding RNA linc-ITGB1 inhibits cancer stemness and epithelial-mesenchymal transition by reducing the expression of Snail in non-small cell lung cancer. (PMID: 30485693) Guo L … Guo F (Thoracic cancer 2019) 3 56
  4. Long non-coding RNA linc-ITGB1 promotes cell proliferation, migration, and invasion in human hepatoma carcinoma by up-regulating ROCK1. (PMID: 30279202) Huang L … Gao W (Bioscience reports 2018) 3 56
  5. Long non-coding RNA Linc-ITGB1 knockdown inhibits cell migration and invasion in GBC-SD/M and GBC-SD gallbladder cancer cell lines. (PMID: 25893892) Wang L … Dong P (Chemical biology & drug design 2015) 2 56

Products for IATPR Gene

Sources for IATPR Gene