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Aliases for HTR2A-AS1 Gene

Subcategory (RNA class) for HTR2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HTR2A-AS1 Gene

  • HTR2A Antisense RNA 1 2 3 5
  • HTR2A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HTR2A-AS1 Gene

Previous GeneCards Identifiers for HTR2A-AS1 Gene

  • GC00U933704
  • GC13P047427

Summaries for HTR2A-AS1 Gene

GeneCards Summary for HTR2A-AS1 Gene

HTR2A-AS1 (HTR2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HTR2A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HTR2A-AS1 Gene

Genomics for HTR2A-AS1 Gene

GeneHancer (GH) Regulatory Elements for HTR2A-AS1 Gene

Promoters and enhancers for HTR2A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I046803 Enhancer 0.5 ENCODE 10.7 -48.0 -47973 2.2 JUND POLR2A FOSL2 FOS HTR2A-AS1 ESD GC13M046835 GC13M046836
GH13I046865 Enhancer 0.8 Ensembl ENCODE 0.4 +14.1 14117 1.6 MAX CEBPB MNT CEBPG FOXA1 FOXP2 MYC ZBTB17 HTR2A HTR2A-AS1 GC13M046892
GH13I046866 Enhancer 0.2 ENCODE 0.4 +13.2 13151 0.1 HTR2A HTR2A-AS1 GC13M046892
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HTR2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HTR2A-AS1 Gene

Genomic Locations for HTR2A-AS1 Gene
chr13:46,852,140-46,856,299
(GRCh38/hg38)
Size:
4,160 bases
Orientation:
Plus strand
chr13:47,426,278-47,430,434
(GRCh37/hg19)

Genomic View for HTR2A-AS1 Gene

Genes around HTR2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HTR2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HTR2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HTR2A-AS1 Gene

Proteins for HTR2A-AS1 Gene

Post-translational modifications for HTR2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HTR2A-AS1 Gene

Domains & Families for HTR2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HTR2A-AS1 Gene

Function for HTR2A-AS1 Gene

Phenotypes From GWAS Catalog for HTR2A-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HTR2A-AS1 Gene

Localization for HTR2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HTR2A-AS1 Gene

Pathways & Interactions for HTR2A-AS1 Gene

SuperPathways for HTR2A-AS1 Gene

No Data Available

Interacting Proteins for HTR2A-AS1 Gene

Gene Ontology (GO) - Biological Process for HTR2A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HTR2A-AS1 Gene

Drugs & Compounds for HTR2A-AS1 Gene

No Compound Related Data Available

Transcripts for HTR2A-AS1 Gene

mRNA/cDNA for HTR2A-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HTR2A-AS1 Gene

No ASD Table

Relevant External Links for HTR2A-AS1 Gene

GeneLoc Exon Structure for
HTR2A-AS1
ECgene alternative splicing isoforms for
HTR2A-AS1

Expression for HTR2A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HTR2A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HTR2A-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with HTR2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HTR2A-AS1 Gene

Orthologs for HTR2A-AS1 Gene

Evolution for HTR2A-AS1 Gene

ENSEMBL:
Gene Tree for HTR2A-AS1 (if available)
TreeFam:
Gene Tree for HTR2A-AS1 (if available)

No data available for Orthologs for HTR2A-AS1 Gene

Paralogs for HTR2A-AS1 Gene

No data available for Paralogs for HTR2A-AS1 Gene

Variants for HTR2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HTR2A-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000162432 -- 46,856,164(+) T/C non_coding_transcript_variant
rs1000212998 -- 46,855,937(+) C/T intron_variant
rs1000398334 -- 46,850,837(+) T/C upstream_transcript_variant
rs1000616760 -- 46,852,043(+) C/T upstream_transcript_variant
rs1001120943 -- 46,852,189(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HTR2A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763019 CNV loss 21179565

Additional Variant Information for HTR2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HTR2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HTR2A-AS1 Gene

Disorders for HTR2A-AS1 Gene

Additional Disease Information for HTR2A-AS1

No disorders were found for HTR2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HTR2A-AS1 Gene

Publications for HTR2A-AS1 Gene

  1. Genomic structure and expression of the human serotonin 2A receptor gene (HTR2A) locus: identification of novel HTR2A and antisense (HTR2A-AS1) exons. (PMID: 26738766) Ruble CL … Nisenbaum LK (BMC genetics 2016) 3 58
  2. Pharmacogenetic analysis of the mGlu2/3 agonist LY2140023 monohydrate in the treatment of schizophrenia. (PMID: 21173788) Liu W … Nisenbaum LK (The pharmacogenomics journal 2012) 3 58

Products for HTR2A-AS1 Gene

Sources for HTR2A-AS1 Gene

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